RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA849822", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA849822 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27149297 27149297 PRJNA849822_P_NODE_19522_length_327_cov_2.330709_g19348_i0 PRJNA849822 19522 327 2.330709 7.62141843 Chlamydiales bacterium 2047757 Bacteria Bacteria 140 2.98e-36   NR MFT5319030.1 2047757 g19348 i0 60.7 0.981651376146789 107 42 98.2 0 1 321 86 192 MFT5319030.1 5-histidylcysteine sulfoxide synthase/putative 4-mercaptohistidine N1-methyltransferase [Chlamydiales bacterium] diamond 321 140 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
28097171 28097171 PRJNA849822_P_NODE_2145_length_1123_cov_2.055238_g2031_i0 PRJNA849822 2145 1123 2.055238 23.08032274 Parachlamydiales bacterium 2052178 Bacteria Bacteria 54.7 3.29e-4   NR MFA6915704.1 2052178 g2031 i0 30.2 0.515583259127337 96 59 25.6 2 506 219 22 109 MFA6915704.1 collagen-binding domain-containing protein [Parachlamydiales bacterium] diamond 579 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
29202422 29202422 PRJNA849822_P_NODE_18889_length_333_cov_1.200000_g18715_i0 PRJNA849822 18889 333 1.2 3.996 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 53.1 2.4e-5   NR MBX9923428.1 2047756 g18715 i0 35.9 0.702702702702703 78 45 70.3 1 3 236 1118 1190 MBX9923428.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 234 53.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
29368493 29368493 PRJNA849822_P_NODE_33609_length_253_cov_0.866667_g33435_i0 PRJNA849822 33609 253 0.866667 2.19266751 Chlamydiia 204429 Bacteria Bacteria 70.5 3.1e-12   NR SCA63848.1 1871323 g33435 i0 65.3 7.92094861660079 49 17 58.1 0 252 106 207 255 SCA63848.1 Uncharacterized protein SCG7086_BG_00050 [Chlamydiales bacterium SCGC AG-110-P3] diamond 2004 70.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium SCGC AG-110-P3
30750103 30750103 PRJNA849822_P_NODE_39454_length_246_cov_0.901734_g39280_i0 PRJNA849822 39454 246 0.901734 2.21826564 Chlamydiia bacterium 2052156 Bacteria Bacteria 105 1.73e-25   NR MCB1111046.1 2052156 g39280 i0 64.4 0.890243902439024 73 26 89 0 237 19 193 265 MCB1111046.1 cysteine synthase family protein [Chlamydiia bacterium] diamond 219 105 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
31327084 31327084 PRJNA849822_P_NODE_21175_length_315_cov_1.157025_g21001_i0 PRJNA849822 21175 315 1.157025 3.64462875 Bacteria 2 Bacteria Bacteria 79 8.78e-15   NR OGN63406.1 1797604 g21001 i0 46.2 3.9047619047619 78 42 74.3 0 234 1 6 83 OGN63406.1 MAG: hypothetical protein A3E26_02390, partial [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_32] diamond 1230 79.7 0.991217063989962 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_32
31793081 31793081 PRJNA849822_P_NODE_26877_length_281_cov_1.307692_g26703_i0 PRJNA849822 26877 281 1.307692 3.67461452 Chlamydiales bacterium 2047757 Bacteria Bacteria 112 1.5400000000000002e-27   NR MBX9743860.1 2047757 g26703 i0 55.4 1.9644128113879 92 39 96.1 2 272 3 161 252 MBX9743860.1 methyltransferase domain-containing protein [Chlamydiales bacterium] diamond 552 112 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;