RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA849822", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA849822 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14866660 14866660 PRJNA849822_P_NODE_35032_length_251_cov_1.292135_g34858_i0 PRJNA849822 35032 251 1.292135 3.24325885 Methanobrevibacter millerae 230361 Archaea Archaea 54.7 0.006   NTclustered gi|968564921|gb|CP011266.1| 230361 g34858 i0 96.875 0.127490039840637 32 1 13 0 127 158 810802 810833 Methanobrevibacter millerae strain SM9, complete genome blastn 32 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
25064719 25064719 PRJNA849822_P_NODE_19040_length_332_cov_1.023166_g18866_i0 PRJNA849822 19040 332 1.023166 3.39691112 Methanosphaera stadtmanae 2317 Archaea Archaea 56.5 0.002   NTclustered gi|1721134173|emb|LR698975.1| 2317 g18866 i0 96.97 0.0993975903614458 33 1 10 0 198 230 1657584 1657616 Methanosphaera stadtmanae isolate MGYG-HGUT-02164 genome assembly, chromosome: 1 blastn 33 56.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
28863147 28863147 PRJNA849822_P_NODE_22228_length_307_cov_1.666667_g22054_i0 PRJNA849822 22228 307 1.666667 5.11666769 root 1 Root_unresolved Root_unresolved 53.9 9.93e-6   NR MBQ7928413.1 66852 g22054 i0 40.7 4.39739413680782 86 46 79.2 2 306 64 465 550 MBQ7928413.1 Ig-like domain repeat protein [Methanobrevibacter sp.] diamond 1350 54.3 0.992633517495396 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;