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contig_metadata

13 rows where bioproject = "PRJNA849646", tax_phylum = "Nematoda" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 13 ✖

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849646 · 13 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2113691 2113691 PRJNA849646_P_NODE_31862_length_248_cov_1.760000_g31744_i0 PRJNA849646 31862 248 1.76 4.3648 Caenorhabditis elegans 6239 Nematoda Nematoda 459 1.13e-124   NTclustered gi|1845972078|ref|NM_001027037.4| 6239 g31744 i0 100 9.01612903225806 248 0 100 0 1 248 3995 3748 Caenorhabditis elegans Receptor-type tyrosine-protein phosphatase (clr-1), mRNA blastn 2236 459 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
2113808 2113808 PRJNA849646_P_NODE_41582_length_228_cov_3.554839_g41464_i0 PRJNA849646 41582 228 3.554839 8.10503292 Caenorhabditis elegans 6239 Nematoda Nematoda 422 1.34e-113   NTclustered gi|1015446|emb|Z54342.1| 6239 g41464 i0 100 3 228 0 100 0 1 228 34890 34663 Caenorhabditis elegans Cosmid C08H9, complete sequence blastn 684 422 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3388858 3388858 PRJNA849646_P_NODE_20563_length_267_cov_2.226804_g20445_i0 PRJNA849646 20563 267 2.226804 5.94556668 Caenorhabditis elegans 6239 Nematoda Nematoda 488 1.5699999999999998e-133   NTclustered gi|1972239523|ref|NM_061815.6| 6239 g20445 i0 99.625 4.91760299625468 267 1 100 0 1 267 281 15 Caenorhabditis elegans MICOS complex subunit Mic10 (F54A3.5), mRNA blastn 1313 488 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9766252 9766252 PRJNA849646_P_NODE_26488_length_256_cov_1.683060_g26370_i0 PRJNA849646 26488 256 1.68306 4.3086336 Caenorhabditis elegans 6239 Nematoda Nematoda 473 4.189999999999999e-129   NTclustered gi|1972256714|ref|NM_064506.8| 6239 g26370 i0 100 4.01171875 256 0 100 0 1 256 364 619 Caenorhabditis elegans NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (ndub-8), mRNA blastn 1027 473 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
12317327 12317327 PRJNA849646_P_NODE_22850_length_263_cov_1.621053_g22732_i0 PRJNA849646 22850 263 1.621053 4.26336939 Caenorhabditis elegans 6239 Nematoda Nematoda 486 5.5499999999999986e-133   NTclustered gi|1972288669|ref|NM_072288.7| 6239 g22732 i0 100 5.44866920152091 263 0 100 0 1 263 1546 1808 Caenorhabditis elegans ABC transporter domain-containing protein (pmp-5), mRNA blastn 1433 486 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13592127 13592127 PRJNA849646_P_NODE_7631_length_295_cov_3.004505_g7513_i0 PRJNA849646 7631 295 3.004505 8.86328975 Caenorhabditis elegans 6239 Nematoda Nematoda 278 4.15e-70   NTclustered gi|687867925|emb|LK929948.1| 6239 g7513 i0 100 2.02033898305085 150 0 100 0 1 150 674 525 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0001447 blastn 596 278 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14865994 14865994 PRJNA849646_P_NODE_10992_length_286_cov_1.361502_g10874_i0 PRJNA849646 10992 286 1.361502 3.89389572 Caenorhabditis elegans 6239 Nematoda Nematoda 529 1e-145   NTclustered gi|1972264791|ref|NM_066172.10| 6239 g10874 i0 100 14.0244755244755 286 0 100 0 1 286 12 297 Caenorhabditis elegans Large ribosomal subunit protein eL36 (rpl-36), mRNA blastn 4011 529 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19964691 19964691 PRJNA849646_P_NODE_29856_length_250_cov_2.508475_g29738_i0 PRJNA849646 29856 250 2.508475 6.2711875 Caenorhabditis elegans 6239 Nematoda Nematoda 455 1.48e-123   NTclustered gi|1972230218|ref|NM_001263440.3| 6239 g29738 i0 99.6 2.992 250 0 100 1 1 250 263 511 Caenorhabditis elegans AbLIM_anchor domain-containing protein (C30F12.5), mRNA blastn 748 455 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22514980 22514980 PRJNA849646_P_NODE_26238_length_256_cov_2.513661_g26120_i0 PRJNA849646 26238 256 2.513661 6.43497216 Caenorhabditis elegans 6239 Nematoda Nematoda 473 4.189999999999999e-129   NTclustered gi|1972228951|ref|NM_170865.6| 6239 g26120 i0 100 7 256 0 100 0 1 256 1884 1629 Caenorhabditis elegans polynucleotide adenylyltransferase (tent-5), mRNA blastn 1792 473 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22515109 22515109 PRJNA849646_P_NODE_38618_length_241_cov_0.916667_g38500_i0 PRJNA849646 38618 241 0.916667 2.20916747 Caenorhabditis elegans 6239 Nematoda Nematoda 446 8.519999999999999e-121   NTclustered gi|687865712|emb|LK927652.1| 6239 g38500 i0 100 3.99170124481328 241 0 100 0 1 241 95124 95364 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000108 blastn 962 446 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23790314 23790314 PRJNA849646_P_NODE_12139_length_283_cov_3.033333_g12021_i0 PRJNA849646 12139 283 3.033333 8.58433239 Caenorhabditis elegans 6239 Nematoda Nematoda 523 4.5999999999999983e-144   NTclustered gi|1972312769|ref|NM_078428.8| 6239 g12021 i0 100 9.92932862190813 283 0 100 0 1 283 691 409 Caenorhabditis elegans Myosin regulatory light chain 1 (mlc-1), mRNA blastn 2810 523 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23790698 23790698 PRJNA849646_P_NODE_7519_length_295_cov_5.594595_g7401_i0 PRJNA849646 7519 295 5.594595 16.50405525 Caenorhabditis elegans 6239 Nematoda Nematoda 545 1.03e-150   NTclustered gi|1972306251|ref|NM_001029747.7| 6239 g7401 i0 100 10.8135593220339 295 0 100 0 1 295 320 614 Caenorhabditis elegans Transcription factor egl-13 (egl-13), mRNA blastn 3190 545 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25064194 25064194 PRJNA849646_P_NODE_12920_length_282_cov_1.473684_g12802_i0 PRJNA849646 12920 282 1.473684 4.15578888 Caenorhabditis elegans 6239 Nematoda Nematoda 521 1.6499999999999996e-143   NTclustered gi|1734320731|ref|NM_062161.5| 6239 g12802 i0 100 5.1205673758865196 282 0 100 0 1 282 448 729 Caenorhabditis elegans Cuticle collagen 71 (col-71), mRNA blastn 1444 521 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;