RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA849646" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849646 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28223307 28223307 PRJNA849646_P_NODE_33686_length_246_cov_1.780347_g33568_i0 PRJNA849646 33686 246 1.780347 4.37965362 Hyaloraphidium curvatum 82268 Fungi Fungi 110 4.86e-29   NR KAI9018215.1 82268 g33568 i0 64.6 0.963414634146341 79 28 96.3 0 244 8 64 142 KAI9018215.1 microsomal glutathione S-transferase [Hyaloraphidium curvatum] diamond 237 110 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
29991769 29991769 PRJNA849646_P_NODE_37991_length_241_cov_2.636905_g37873_i0 PRJNA849646 37991 241 2.636905 6.35494105 Gonapodya prolifera JEL478 1344416 Fungi Fungi 62.8 3.06e-9   NR KXS22035.1 1344416 g37873 i0 58.5 0.659751037344398 53 22 66 0 215 57 518 570 KXS22035.1 hypothetical protein M427DRAFT_50400 [Gonapodya prolifera JEL478] diamond 159 62.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Gonapodyaceae Gonapodya Gonapodya prolifera
30339776 30339776 PRJNA849646_P_NODE_4032_length_310_cov_4.540084_g3914_i0 PRJNA849646 4032 310 4.540084 14.0742604 Spizellomyces sp. 'palustris' 117820 Fungi Fungi 56.2 5.51e-7   NR TPX63232.1 117820 g3914 i0 50 3.30967741935484 46 23 44.5 0 165 302 140 185 TPX63232.1 hypothetical protein SpCBS45565_g06770 [Spizellomyces sp. 'palustris'] diamond 1026 56.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces sp. 'palustris'
32141370 32141370 PRJNA849646_P_NODE_22258_length_264_cov_1.612565_g22140_i0 PRJNA849646 22258 264 1.612565 4.2571716 Chytridiales sp. JEL 2011832 Fungi Fungi 119 8.59e-31   NR KAJ3417195.1 2786947 g22140 i0 78.1 4.94318181818182 73 16 83 0 220 2 145 217 KAJ3417195.1 60S ribosomal protein L8B [Chytridiales sp. JEL 0842] diamond 1305 119 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales     Chytridiales sp. JEL 0842
32299866 32299866 PRJNA849646_P_NODE_14579_length_279_cov_1.339806_g14461_i0 PRJNA849646 14579 279 1.339806 3.73805874 Siphonaria sp. JEL 2047469 Fungi Fungi 66.2 3e-10   NR KAJ3031318.1 2723227 g14461 i0 77.8 0.78494623655914 36 8 38.7 0 279 172 282 317 KAJ3031318.1 hypothetical protein HDU68_005060 [Siphonaria sp. JEL0065] diamond 219 66.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Siphonaria Siphonaria sp. JEL0065

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;