RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA849646" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849646 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28547754 28547754 PRJNA849646_P_NODE_2087_length_378_cov_1.009836_g1969_i0 PRJNA849646 2087 378 1.009836 3.81718008 Chlorobium 1091 Bacteria Bacteria 142 6.159999999999999e-37   NR NTU52783.1 2067991 g1969 i0 60.2 1.88888888888889 118 46 92.9 1 377 27 160 277 NTU52783.1 FAD-dependent thymidylate synthase [Chlorobiaceae bacterium] diamond 714 142 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
31263914 31263914 PRJNA849646_P_NODE_26675_length_255_cov_3.791209_g26557_i0 PRJNA849646 26675 255 3.791209 9.66758295 Pseudomonadati 3379134 Bacteria Bacteria 63.9 4.52e-10   NR MBV5328147.1 1095 g26557 i0 50 2.37647058823529 52 26 61.2 0 97 252 155 206 MBV5328147.1 DUF4351 domain-containing protein [Chlorobium sp.] diamond 606 63.9 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;