RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA849646" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849646 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21240092 21240092 PRJNA849646_P_NODE_11937_length_284_cov_1.459716_g11819_i0 PRJNA849646 11937 284 1.459716 4.14559344 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 420 6.24e-113   NTclustered gi|971146634|emb|LN879502.1| 389348 g11819 i0 93.31 190.788732394366 284 19 100 0 1 284 1251190 1251473 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 54184 420 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
26706437 26706437 PRJNA849646_P_NODE_36081_length_244_cov_0.900585_g35963_i0 PRJNA849646 36081 244 0.900585 2.1974274 Chlamydiales bacterium 2047757 Bacteria Bacteria 142 1.14e-39   NR MCC5833019.1 2047757 g35963 i0 86.4 1.99180327868852 81 11 99.6 0 243 1 131 211 MCC5833019.1 enoyl-[acyl-carrier-protein] reductase [Chlamydiales bacterium] diamond 486 142 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27813249 27813249 PRJNA849646_P_NODE_28664_length_252_cov_1.502793_g28546_i0 PRJNA849646 28664 252 1.502793 3.78703836 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 85.5 1.73e-19   NR MEI8124160.1 2052176 g28546 i0 55.3 3.52380952380952 76 26 81 1 5 208 25 100 MEI8124160.1 DUF971 domain-containing protein [Parachlamydiaceae bacterium] diamond 888 85.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29486194 29486194 PRJNA849646_P_NODE_12550_length_283_cov_1.138095_g12432_i0 PRJNA849646 12550 283 1.138095 3.22080885 Parachlamydia sp. 2052048 Bacteria Bacteria 51.6 2.74e-6   NR MCE2982202.1 2052048 g12432 i0 75.7 0.392226148409894 37 9 39.2 0 168 278 4 40 MCE2982202.1 hypothetical protein [Parachlamydia sp.] diamond 111 51.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
31223752 31223752 PRJNA849646_P_NODE_24035_length_261_cov_1.234043_g23917_i0 PRJNA849646 24035 261 1.234043 3.22085223 Parachlamydia sp. 2052048 Bacteria Bacteria 138 3.22e-37   NR MCE2983996.1 2052048 g23917 i0 69.4 0.977011494252874 85 26 97.7 0 3 257 264 348 MCE2983996.1 ABC transporter ATP-binding protein [Parachlamydia sp.] diamond 255 138 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
31888078 31888078 PRJNA849646_P_NODE_15137_length_278_cov_1.185366_g15019_i0 PRJNA849646 15137 278 1.185366 3.29531748 Parachlamydiales bacterium 2052178 Bacteria Bacteria 139 3.48e-36   NR MFA6916908.1 2052178 g15019 i0 77.6 0.91726618705036 85 19 91.7 0 277 23 529 613 MFA6916908.1 malto-oligosyltrehalose trehalohydrolase [Parachlamydiales bacterium] diamond 255 139 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
32204641 32204641 PRJNA849646_P_NODE_38538_length_241_cov_0.916667_g38420_i0 PRJNA849646 38538 241 0.916667 2.20916747 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 121 8.91e-30   NR MBA3815389.1 2052176 g38420 i0 68.8 3.98340248962656 80 25 99.6 0 1 240 146 225 MBA3815389.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 960 121 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;