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contig_metadata

28 rows where bioproject = "PRJNA849646", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 28 ✖

tax_kingdom 1

  • Pseudomonadati · 28 ✖

bioproject 1

  • PRJNA849646 · 28 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1233187 1233187 PRJNA849646_P_NODE_17421_length_273_cov_2.190000_g17303_i0 PRJNA849646 17421 273 2.19 5.9787 Polyangiales 3031712 Bacteria Bacteria 102 9.01e-25   NR HVH44717.1 1971228 g17303 i0 75 1.64835164835165 68 17 74.7 0 206 3 18 85 HVH44717.1 TetR/AcrR family transcriptional regulator [Labilithrix sp.] diamond 450 103 0.990291262135922 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
4666619 4666619 PRJNA849646_P_NODE_22044_length_264_cov_2.471204_g21926_i0 PRJNA849646 22044 264 2.471204 6.52397856 Anaeromyxobacter sp. Fw109-5 404589 Bacteria Bacteria 148 2.9899999999999995e-31   NTclustered gi|470482295|ref|NR_076524.1| 404589 g21926 i0 78.03 90.969696969697 264 39 97 14 3 259 1489 1740 Anaeromyxobacter sp. Fw109-5 strain Fw109-5 23S ribosomal RNA, complete sequence blastn 24016 148 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. Fw109-5
7611263 7611263 PRJNA849646_P_NODE_12486_length_283_cov_1.366667_g12368_i0 PRJNA849646 12486 283 1.366667 3.86766761 Bacteria 2 Bacteria Bacteria 164 4.7399999999999996e-48   NR MBX3154714.1 2026735 g12368 i0 90.4 7.97173144876325 94 9 99.6 0 1 282 159 252 MBX3154714.1 ABC transporter permease [Deltaproteobacteria bacterium] diamond 2256 165 0.993939393939394 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
11041764 11041764 PRJNA849646_P_NODE_16289_length_275_cov_2.608911_g16171_i0 PRJNA849646 16289 275 2.608911 7.17450525 Byssovorax sp. 2927945 Bacteria Bacteria 145 1.6499999999999996e-41   NR HEY4120594.1 2927945 g16171 i0 79.7 0.861818181818182 79 16 86.2 0 272 36 146 224 HEY4120594.1 cytochrome c oxidase subunit 3 family protein [Byssovorax sp.] diamond 237 145 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Byssovorax Byssovorax sp.
13592136 13592136 PRJNA849646_P_NODE_8271_length_292_cov_1.789954_g8153_i0 PRJNA849646 8271 292 1.789954 5.22666568 Labilithrix luteola 1391654 Bacteria Bacteria 285 2.45e-72   NTclustered gi|913610804|gb|CP012333.1| 1391654 g8153 i0 84.314 5.24657534246575 306 32 100 9 1 292 11029323 11029020 Labilithrix luteola strain DSM 27648, complete genome blastn 1532 285 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
14866455 14866455 PRJNA849646_P_NODE_7272_length_296_cov_4.520179_g7154_i0 PRJNA849646 7272 296 4.520179 13.37972984 Myxococcus xanthus 34 Bacteria Bacteria 446 1.0799999999999999e-120   NTclustered gi|13959815|gb|AY033407.1| 34 g7154 i0 93.06 85.5641891891892 317 1 100 4 1 296 1336 1652 Myxococcus xanthus USC7-1p and USC7-2p genes, complete cds blastn 25327 446 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
16140850 16140850 PRJNA849646_P_NODE_17373_length_273_cov_2.395000_g17255_i0 PRJNA849646 17373 273 2.395 6.53835 Kofleriaceae bacterium 2212474 Bacteria Bacteria 112 1.2900000000000002e-27   NR HWM87045.1 2212474 g17255 i0 64.1 2.02197802197802 92 31 98.9 1 2 271 119 210 HWM87045.1 SDR family oxidoreductase [Kofleriaceae bacterium] diamond 552 112 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
17416575 17416575 PRJNA849646_P_NODE_38474_length_241_cov_0.916667_g38356_i0 PRJNA849646 38474 241 0.916667 2.20916747 Cystobacter fuscus 43 Bacteria Bacteria 128 3.4999999999999997e-25   NTclustered gi|2579665545|gb|CP043492.1| 43 g38356 i0 81.132 4.28215767634855 159 30 66 0 1 159 1861127 1861285 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 1032 128 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
17416597 17416597 PRJNA849646_P_NODE_40294_length_234_cov_2.645963_g40176_i0 PRJNA849646 40294 234 2.645963 6.19155342 Anaeromyxobacter oryzae 2918170 Bacteria Bacteria 95.3 3.43e-15   NTclustered gi|2199265233|dbj|AP025591.1| 2918170 g40176 i0 82.301 2.21367521367521 113 16 47 4 101 211 4965376 4965486 Anaeromyxobacter oryzae DNA, complete genome blastn 518 95.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter oryzae
18689777 18689777 PRJNA849646_P_NODE_8515_length_291_cov_2.045872_g8397_i0 PRJNA849646 8515 291 2.045872 5.95348752 Myxococcales bacterium 2026763 Bacteria Bacteria 139 2.99e-37   NR MBL9023310.1 2026763 g8397 i0 58.8 4.18556701030928 114 29 99 1 290 3 186 299 MBL9023310.1 prolipoprotein diacylglyceryl transferase [Myxococcales bacterium] diamond 1218 139 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
21240091 21240091 PRJNA849646_P_NODE_11857_length_284_cov_1.459716_g11739_i0 PRJNA849646 11857 284 1.459716 4.14559344 Polyangium aurulentum 2567896 Bacteria Bacteria 351 2.31e-92   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g11739 i0 89.362 0.992957746478873 282 27 99 3 1 281 7818658 7818937 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 282 351 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
21635365 21635365 PRJNA849646_P_NODE_30537_length_250_cov_0.870056_g30419_i0 PRJNA849646 30537 250 0.870056 2.17514 Myxococcaceae bacterium 2484252 Bacteria Bacteria 78.2 6.55e-15   NR MCU0701220.1 2484252 g30419 i0 51.9 2.88 81 38 97.2 1 244 2 1 80 MCU0701220.1 hypothetical protein [Myxococcaceae bacterium] diamond 720 78.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
23790286 23790286 PRJNA849646_P_NODE_10179_length_287_cov_2.514019_g10061_i0 PRJNA849646 10179 287 2.514019 7.21523453 Bacteria 2 Bacteria Bacteria 124 8.769999999999998e-32   NR WP_012527738.1 447217 g10061 i0 65.9 18.7526132404181 91 31 95.1 0 278 6 1 91 WP_012527738.1 cystathionine gamma-synthase [Anaeromyxobacter sp. K] diamond 5382 125 0.992 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. K
26833460 26833460 PRJNA849646_P_NODE_34101_length_246_cov_0.890173_g33983_i0 PRJNA849646 34101 246 0.890173 2.18982558 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 51.2 4.03e-5   NR MBN8541316.1 2026735 g33983 i0 32 0.914634146341463 75 47 91.5 2 4 228 144 214 MBN8541316.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 225 51.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27339524 27339524 PRJNA849646_P_NODE_32003_length_248_cov_1.531429_g31885_i0 PRJNA849646 32003 248 1.531429 3.79794392 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.5 0.0184   NR PLX45525.1 2026735 g31885 i0 40.8 1.77822580645161 71 37 82.3 3 214 11 106 174 PLX45525.1 MAG: pyridoxine 5'-phosphate synthase [Deltaproteobacteria bacterium] diamond 441 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27465863 27465863 PRJNA849646_P_NODE_30303_length_250_cov_0.870056_g30185_i0 PRJNA849646 30303 250 0.870056 2.17514 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 133 2.41e-35   NR MCZ7685190.1 2510337 g30185 i0 77.1 2.988 83 19 99.6 0 249 1 155 237 MCZ7685190.1 GDSL-type esterase/lipase family protein [Sandaracinaceae bacterium] diamond 747 133 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium
28065615 28065615 PRJNA849646_P_NODE_29225_length_251_cov_1.511236_g29107_i0 PRJNA849646 29225 251 1.511236 3.79320236 Polyangiales bacterium 3034171 Bacteria Bacteria 137 1.59e-35   NR HET8936233.1 3034171 g29107 i0 81.9 2.97609561752988 83 15 99.2 0 1 249 321 403 HET8936233.1 AAA domain-containing protein [Polyangiales bacterium] diamond 747 137 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
28191656 28191656 PRJNA849646_P_NODE_42686_length_216_cov_6.545455_g42568_i0 PRJNA849646 42686 216 6.545455 14.1381828 Myxococcales bacterium 2026763 Bacteria Bacteria 53.9 2.56e-6   NR MCA9675888.1 2026763 g42568 i0 60 0.625 45 18 62.5 0 80 214 4 48 MCA9675888.1 tetratricopeptide repeat protein [Myxococcales bacterium] diamond 135 53.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28294864 28294864 PRJNA849646_P_NODE_26306_length_256_cov_2.327869_g26188_i0 PRJNA849646 26306 256 2.327869 5.95934464 Pseudomonadati 3379134 Bacteria Bacteria 141 3.8e-40   NR MBI3554935.1 2026735 g26188 i0 75 1.96875 84 21 98.4 0 253 2 103 186 MBI3554935.1 M23 family metallopeptidase [Deltaproteobacteria bacterium] diamond 504 141 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28642401 28642401 PRJNA849646_P_NODE_37767_length_242_cov_0.911243_g37649_i0 PRJNA849646 37767 242 0.911243 2.20520806 Bacteria 2 Bacteria Bacteria 84 1.11e-16   NR MBW2526698.1 2026735 g37649 i0 46.2 2.92561983471074 78 42 96.7 0 1 234 289 366 MBW2526698.1 sulfatase-like hydrolase/transferase [Deltaproteobacteria bacterium] diamond 708 84 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29297028 29297028 PRJNA849646_P_NODE_7589_length_295_cov_3.396396_g7471_i0 PRJNA849646 7589 295 3.396396 10.0193682 Myxococcota bacterium 2818507 Bacteria Bacteria 166 4.1e-45   NR MDQ3337442.1 2818507 g7471 i0 72.4 2.33898305084746 116 12 98.6 2 3 293 6 120 MDQ3337442.1 AMP-binding protein [Myxococcota bacterium] diamond 690 166 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30308134 30308134 PRJNA849646_P_NODE_10332_length_287_cov_1.686916_g10214_i0 PRJNA849646 10332 287 1.686916 4.84144892 Myxococcota bacterium 2818507 Bacteria Bacteria 49.7 2.04e-4   NR MDP7114309.1 2818507 g10214 i0 43.3 1.01393728222997 97 49 98.3 3 282 1 179 272 MDP7114309.1 tetratricopeptide repeat protein [Myxococcota bacterium] diamond 291 49.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31097415 31097415 PRJNA849646_P_NODE_26875_length_255_cov_2.186813_g26757_i0 PRJNA849646 26875 255 2.186813 5.57637315 Myxococcus sp. NMCA1 2996785 Bacteria Bacteria 98.2 1.33e-21   NR WP_268784015.1 2996785 g26757 i0 57.1 0.988235294117647 84 35 98.8 1 253 2 18 100 WP_268784015.1 restriction endonuclease [Myxococcus sp. NMCA1] diamond 252 98.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus sp. NMCA1
31540344 31540344 PRJNA849646_P_NODE_19336_length_269_cov_6.688776_g19218_i0 PRJNA849646 19336 269 6.688776 17.99280744 Polyangiaceae bacterium 2268199 Bacteria Bacteria 142 1.18e-39   NR NUO52959.1 2268199 g19218 i0 94.9 0.869888475836431 78 4 87 0 268 35 55 132 NUO52959.1 hypothetical protein [Polyangiaceae bacterium] diamond 234 142 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31611875 31611875 PRJNA849646_P_NODE_31096_length_249_cov_1.375000_g30978_i0 PRJNA849646 31096 249 1.375 3.42375 Pseudomonadati 3379134 Bacteria Bacteria 50.1 1.09e-4   NR WP_170136442.1 54 g30978 i0 88.5 2.27710843373494 26 3 31.3 0 172 249 456 481 WP_170136442.1 PAS domain-containing protein [Nannocystis exedens] diamond 567 50.4 0.994047619047619 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis exedens
32014741 32014741 PRJNA849646_P_NODE_36098_length_244_cov_0.900585_g35980_i0 PRJNA849646 36098 244 0.900585 2.1974274 Polyangiaceae bacterium 2268199 Bacteria Bacteria 105 1.52e-25   NR HVZ32035.1 2268199 g35980 i0 63.8 0.983606557377049 80 29 98.4 0 1 240 147 226 HVZ32035.1 hypothetical protein [Polyangiaceae bacterium] diamond 240 105 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32561207 32561207 PRJNA849646_P_NODE_32099_length_248_cov_0.880000_g31981_i0 PRJNA849646 32099 248 0.88 2.1824 Pseudomonadati 3379134 Bacteria Bacteria 107 1.43e-27   NR MBI3556690.1 2026735 g31981 i0 83.8 2.47983870967742 68 11 82.3 0 247 44 80 147 MBI3556690.1 GatB/YqeY domain-containing protein [Deltaproteobacteria bacterium] diamond 615 108 0.990740740740741 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32592558 32592558 PRJNA849646_P_NODE_21119_length_266_cov_2.051813_g21001_i0 PRJNA849646 21119 266 2.051813 5.45782258 Pseudomonadati 3379134 Bacteria Bacteria 63.9 1.71e-10   NR WP_239989240.1 35 g21001 i0 43.2 5.0187969924812 74 39 83.5 2 236 15 4 74 WP_239989240.1 CBS domain-containing protein [Corallococcus macrosporus] diamond 1335 64.3 0.993779160186625 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;