RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA849646", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA849646 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11041802 11041802 PRJNA849646_P_NODE_19449_length_269_cov_2.780612_g19331_i0 PRJNA849646 19449 269 2.780612 7.47984628 Bdellovibrio sp. 28201 Bacteria Bacteria 146 1.5199999999999996e-38   NR MBC7742796.1 28201 g19331 i0 78.7 0.992565055762082 89 19 99.3 0 269 3 768 856 MBC7742796.1 CHASE domain-containing protein [Bdellovibrio sp.] diamond 267 146 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
20359597 20359597 PRJNA849646_P_NODE_1436_length_431_cov_1.916201_g1319_i0 PRJNA849646 1436 431 1.916201 8.25882631 Peredibacter 263370 Bacteria Bacteria 680 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g1319 i0 95.338 94.2598607888631 429 19 99 1 1 429 511279 510852 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 40626 686 0.991253644314869 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
28034185 28034185 PRJNA849646_P_NODE_8985_length_290_cov_1.419355_g8867_i0 PRJNA849646 8985 290 1.419355 4.1161295 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 115 8.179999999999999e-31   NR MDY0009820.1 2053517 g8867 i0 67.4 0.920689655172414 89 29 92.1 0 269 3 9 97 MDY0009820.1 hypothetical protein [Bdellovibrionales bacterium] diamond 267 115 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28823124 28823124 PRJNA849646_P_NODE_35528_length_244_cov_1.801170_g35410_i0 PRJNA849646 35528 244 1.80117 4.3948548 Bacteriovorax sp. 2608087 Bacteria Bacteria 72 1.83e-12   NR MBC7539823.1 2608087 g35410 i0 48.1 1.99180327868852 81 40 97.1 2 3 239 345 425 MBC7539823.1 PKD domain-containing protein [Bacteriovorax sp.] diamond 486 72 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
29107664 29107664 PRJNA849646_P_NODE_22268_length_264_cov_1.612565_g22150_i0 PRJNA849646 22268 264 1.612565 4.2571716 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 74.7 2.74e-13   NR MFP5385538.1 3058048 g22150 i0 43.7 0.988636363636364 87 49 98.9 0 1 261 313 399 MFP5385538.1 translocation/assembly module TamB domain-containing protein [Bacteriovoracia bacterium] diamond 261 74.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
29770468 29770468 PRJNA849646_P_NODE_33291_length_247_cov_0.885057_g33173_i0 PRJNA849646 33291 247 0.885057 2.18609079 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 108 2.34e-28   NR HXH74405.1 2081706 g33173 i0 87.3 4.02024291497976 55 7 66.8 0 1 165 57 111 HXH74405.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 993 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31919844 31919844 PRJNA849646_P_NODE_9497_length_289_cov_1.375000_g9379_i0 PRJNA849646 9497 289 1.375 3.97375 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 61.2 1.83e-8   NR HLT21789.1 2081706 g9379 i0 55.1 0.508650519031142 49 22 50.9 0 149 3 1 49 HLT21789.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Bacteriovoracaceae bacterium] diamond 147 61.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;