RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA849646" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 7 ✖

bioproject 1

  • PRJNA849646 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
838001 838001 PRJNA849646_P_NODE_1001_length_493_cov_3.671429_g884_i0 PRJNA849646 1001 493 3.671429 18.10014497 Gammaretrovirus murleu 3428959 Viruses Viruses 905 0   NTclustered gi|4071074|gb|AF019230.1|AF019230 11786 g884 i0 99.797 99.9634888438134 493 1 100 0 1 493 2288 2780 Murine leukemia virus strain SRS 19-6 complete genome blastn 49282 905 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
2113817 2113817 PRJNA849646_P_NODE_42142_length_226_cov_2.575163_g42024_i0 PRJNA849646 42142 226 2.575163 5.81986838 Gammaretrovirus murleu 3428959 Viruses Viruses 416 6.189999999999998e-112   NTclustered gi|4071074|gb|AF019230.1|AF019230 11786 g42024 i0 100 16.2345132743363 225 0 99 0 2 226 2189 1965 Murine leukemia virus strain SRS 19-6 complete genome blastn 3669 416 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
2113826 2113826 PRJNA849646_P_NODE_43042_length_208_cov_8.733333_g42924_i0 PRJNA849646 43042 208 8.733333 18.16533264 Gammaretrovirus murleu 3428959 Viruses Viruses 385 1.58e-102   NTclustered gi|378404894|dbj|AB187566.2| 11786 g42924 i0 100 99.9375 208 0 100 0 1 208 3437 3230 Murine leukemia virus Graffi GV-1.4 DNA, complete genome blastn 20787 385 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
8491191 8491191 PRJNA849646_P_NODE_4007_length_310_cov_4.624473_g3889_i0 PRJNA849646 4007 310 4.624473 14.3358663 Gammaretrovirus murleu 3428959 Viruses Viruses 278 4.39e-70   NTclustered gi|4071074|gb|AF019230.1|AF019230 11786 g3889 i0 100 92.0129032258065 150 0 96 0 1 150 2866 3015 Murine leukemia virus strain SRS 19-6 complete genome blastn 28524 278 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
12317279 12317279 PRJNA849646_P_NODE_19270_length_270_cov_1.350254_g19152_i0 PRJNA849646 19270 270 1.350254 3.6456858 RD114 retrovirus 11834 Viruses Viruses 499 7.349999999999998e-137   NTclustered gi|306482054|dbj|AB559882.1| 11834 g19152 i0 100 64.5444444444445 270 0 100 0 1 270 299 30 RD114 retrovirus proviral DNA, complete genome, strain: CRT1 blastn 17427 499 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus RD114 retrovirus
12317299 12317299 PRJNA849646_P_NODE_210_length_1217_cov_4.762238_g133_i0 PRJNA849646 210 1217 4.762238 57.95643646 Gammaretrovirus murleu 3428959 Viruses Viruses 1947 0   NTclustered gi|4071074|gb|AF019230.1|AF019230 11786 g133 i0 99.905 94.7493837304848 1057 1 99 0 161 1217 3650 4706 Murine leukemia virus strain SRS 19-6 complete genome blastn 115310 1947 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
17416652 17416652 PRJNA849646_P_NODE_614_length_629_cov_4.870504_g499_i0 PRJNA849646 614 629 4.870504 30.63547016 Gammaretrovirus murleu 3428959 Viruses Viruses 1138 0   NTclustered gi|4071074|gb|AF019230.1|AF019230 11786 g499 i0 99.21 100.241653418124 633 1 100 1 1 629 1989 1357 Murine leukemia virus strain SRS 19-6 complete genome blastn 63052 1138 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;