RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA849646", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 15 ✖

tax_clade 1

  • Sar · 15 ✖

bioproject 1

  • PRJNA849646 · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
838041 838041 PRJNA849646_P_NODE_13821_length_280_cov_1.913043_g13703_i0 PRJNA849646 13821 280 1.913043 5.3565204 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 146 4.32e-41   NR OQR97335.1 1202772 g13703 i0 75 6.83571428571429 92 23 98.6 0 3 278 128 219 OQR97335.1 60S ribosomal protein L5 [Achlya hypogyna] diamond 1914 146 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
2113882 2113882 PRJNA849646_P_NODE_8642_length_290_cov_4.041475_g8524_i0 PRJNA849646 8642 290 4.041475 11.7202775 Phytophthora angustata 3073753 SAR_Eukaryotes SAR_Eukaryotes 180 1.18e-40   NTclustered gi|2689410834|gb|OR588318.1| 3073753 g8524 i0 78.007 8.15862068965517 291 60 99 4 2 290 37 325 Phytophthora angustata isolate NI121 60S ribosomal protein L10 (rpl10) gene, partial cds blastn 2366 180 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora angustata
4666530 4666530 PRJNA849646_P_NODE_15564_length_277_cov_1.323529_g15446_i0 PRJNA849646 15564 277 1.323529 3.66617533 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 171 2.53e-51   NR XP_067817684.1 4779 g15446 i0 85.9 7.97111913357401 92 13 99.6 0 276 1 147 238 XP_067817684.1 hypothetical protein CCR75_004102 [Bremia lactucae] diamond 2208 172 0.994186046511628 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
14866076 14866076 PRJNA849646_P_NODE_17552_length_273_cov_1.540000_g17434_i0 PRJNA849646 17552 273 1.54 4.2042 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 121 2.6799999999999996e-31   NR XP_024586207.1 4781 g17434 i0 85.5 9.32967032967033 69 10 75.8 0 208 2 4 72 XP_024586207.1 40s ribosomal protein s16 [Plasmopara halstedii] diamond 2547 122 0.991803278688525 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
14866236 14866236 PRJNA849646_P_NODE_2972_length_332_cov_3.644788_g2854_i0 PRJNA849646 2972 332 3.644788 12.10069616 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 318 2.79e-82   NTclustered gi|166044589|emb|CU367498.1| 100861 g2854 i0 100 79.0632530120482 172 0 61 0 1 172 177 348 Aphanomyces euteiches cDNA blastn 26249 318 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
14866287 14866287 PRJNA849646_P_NODE_33772_length_246_cov_1.780347_g33654_i0 PRJNA849646 33772 246 1.780347 4.37965362 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 153 2.470000000000001e-44   NR XP_024577919.1 4781 g33654 i0 84.1 10 82 13 100 0 246 1 138 219 XP_024577919.1 proteasome subunit alpha type [Plasmopara halstedii] diamond 2460 153 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
16535896 16535896 PRJNA849646_P_NODE_23753_length_261_cov_2.117021_g23635_i0 PRJNA849646 23753 261 2.117021 5.52542481 root 1 Root_unresolved Root_unresolved 477 3.3099999999999986e-130   NTclustered gi|166046482|emb|CU367599.1| 100861 g23635 i0 99.617 100 261 1 100 0 1 261 153 413 Aphanomyces euteiches cDNA blastn 26100 477 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
16535980 16535980 PRJNA849646_P_NODE_35113_length_245_cov_0.895349_g34995_i0 PRJNA849646 35113 245 0.895349 2.19360505 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 142 1.4e-37   NR XP_024578065.1 4781 g34995 i0 88.9 22.8122448979592 81 9 99.2 0 1 243 440 520 XP_024578065.1 heat shock protein 90 [Plasmopara halstedii] diamond 5589 143 0.993006993006993 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
18689393 18689393 PRJNA849646_P_NODE_16595_length_275_cov_1.524752_g16477_i0 PRJNA849646 16595 275 1.524752 4.193068 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 128 1.29e-36   NR ETM46751.1 4792 g16477 i0 84 4.90909090909091 75 12 81.8 0 273 49 10 84 ETM46751.1 elongation factor 1-alpha, partial [Phytophthora nicotianae] diamond 1350 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
22515055 22515055 PRJNA849646_P_NODE_32818_length_247_cov_1.770115_g32700_i0 PRJNA849646 32818 247 1.770115 4.37218405 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 129 2.46e-35   NR KAK1942099.1 4793 g32700 i0 80 6.75303643724696 80 15 97.2 1 8 247 48 126 KAK1942099.1 40S ribosomal protein S5-2 [Phytophthora citrophthora] diamond 1668 129 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
25064438 25064438 PRJNA849646_P_NODE_320_length_939_cov_11.543880_g223_i0 PRJNA849646 320 939 11.54388 108.3970332 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 1005 0   NTclustered gi|325194231|emb|FR825088.1| 890382 g223 i0 95.016 7.71884984025559 642 28 82 3 299 939 935 1573 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 7248 1005 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
26865331 26865331 PRJNA849646_P_NODE_18221_length_272_cov_1.381910_g18103_i0 PRJNA849646 18221 272 1.38191 3.7587952 Peronospora effusa 542832 SAR_Eukaryotes SAR_Eukaryotes 126 1.05e-35   NR RQM08885.1 542832 g18103 i0 92.9 2.30514705882353 70 5 77.2 0 254 45 16 85 RQM08885.1 hypothetical protein DD237_000613 [Peronospora effusa] diamond 627 126 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora effusa
27781561 27781561 PRJNA849646_P_NODE_42124_length_226_cov_2.732026_g42006_i0 PRJNA849646 42124 226 2.732026 6.17437876 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 138 1.95e-36   NR ETL93890.1 4792 g42006 i0 82.7 5.97345132743363 75 13 99.6 0 226 2 440 514 ETL93890.1 6-phosphogluconate dehydrogenase (decarboxylating), partial [Phytophthora nicotianae] diamond 1350 138 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
28002652 28002652 PRJNA849646_P_NODE_25445_length_258_cov_1.664865_g25327_i0 PRJNA849646 25445 258 1.664865 4.2953517 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 68.6 3.67e-11   NR TMW63146.1 41045 g25327 i0 38 0.918604651162791 79 48 90.7 1 22 255 386 464 TMW63146.1 hypothetical protein Poli38472_002087 [Pythium oligandrum] diamond 237 68.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
32363044 32363044 PRJNA849646_P_NODE_35459_length_244_cov_1.801170_g35341_i0 PRJNA849646 35459 244 1.80117 4.3948548 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 47.8 5.88e-4   NR TYZ66219.1 1485010 g35341 i0 47.8 0.565573770491803 46 22 54.1 1 134 3 254 299 TYZ66219.1 hypothetical protein PybrP1_005628 [[Pythium] brassicae (nom. inval.)] diamond 138 47.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;