RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA849646", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA849646 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5061267 5061267 PRJNA849646_P_NODE_18304_length_271_cov_4.429293_g18186_i0 PRJNA849646 18304 271 4.429293 12.00338403 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 449 7.540000000000001e-122   NTclustered gi|174166|gb|M98367.1|CLPRRLSA 5980 g18186 i0 96.31 98.8819188191882 271 9 100 1 1 271 340 71 Colpoda inflata large subunit ribosomal RNA, 5' end blastn 26797 451 0.995565410199557 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda inflata
7216436 7216436 PRJNA849646_P_NODE_33386_length_246_cov_4.670520_g33268_i0 PRJNA849646 33386 246 4.67052 11.4894792 Sterkiella histriomuscorum 94289 SAR_Eukaryotes SAR_Eukaryotes 350 7.04e-92   NTclustered gi|220966760|gb|FJ545743.1| 94289 g33268 i0 92.276 81.5447154471545 246 19 100 0 1 246 5687 5932 Sterkiella histriomuscorum 17S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence; macronuclear blastn 20060 350 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
9766356 9766356 PRJNA849646_P_NODE_35408_length_244_cov_2.304094_g35290_i0 PRJNA849646 35408 244 2.304094 5.62198936 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 429 8.699999999999998e-116   NTclustered gi|2651357791|gb|PP174306.1| 41631 g35290 i0 98.361 81.5040983606557 244 4 100 0 1 244 3604 3361 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19887 429 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
21240147 21240147 PRJNA849646_P_NODE_16957_length_274_cov_2.039801_g16839_i0 PRJNA849646 16957 274 2.039801 5.58905474 Cyclotrichium cyclokaryon 696133 SAR_Eukaryotes SAR_Eukaryotes 350 7.97e-92   NTclustered gi|375305436|gb|JF975396.1| 696133 g16839 i0 93.939 55.6277372262774 231 14 84 0 44 274 1 231 Cyclotrichium cyclokaryon isolate LWW07111501 28S ribosomal RNA gene, partial sequence blastn 15242 350 1 Eukaryota Sar   Ciliophora Litostomatea Haptorida Didiniidae Cyclotrichium Cyclotrichium cyclokaryon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;