RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA849646" and tax_clade = "Methanomada group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA849646 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2508854 2508854 PRJNA849646_P_NODE_32122_length_248_cov_0.880000_g32004_i0 PRJNA849646 32122 248 0.88 2.1824 Methanocaldococcus 196118 Archaea Archaea 65.8 2.88e-6   NTclustered gi|470491724|ref|NR_077055.1| 2190 g32004 i0 97.368 3.67741935483871 38 1 15 0 1 38 1177 1140 Methanocaldococcus jannaschii strain JAL-1 23S ribosomal RNA gene, complete sequence blastn 912 65.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
23790583 23790583 PRJNA849646_P_NODE_36819_length_243_cov_0.905882_g36701_i0 PRJNA849646 36819 243 0.905882 2.20129326 Methanocaldococcus jannaschii 2190 Archaea Archaea 71.3 6.05e-8   NTclustered gi|6626255|gb|L77117.1| 243232 g36701 i0 100 0.625514403292181 38 0 16 0 206 243 149221 149184 Methanocaldococcus jannaschii DSM 2661, complete genome blastn 152 71.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
26968207 26968207 PRJNA849646_P_NODE_19842_length_269_cov_1.183673_g19724_i0 PRJNA849646 19842 269 1.183673 3.18408037 Methanobacterium 2160 Archaea Archaea 95.1 9.94e-21   NR MEN4017723.1 2164 g19724 i0 56.3 2.86617100371747 87 30 97 1 269 9 93 171 MEN4017723.1 MnmC family methyltransferase [Methanobacterium sp.] diamond 771 95.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;