RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA849646" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 9 ✖

bioproject 1

  • PRJNA849646 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14866266 14866266 PRJNA849646_P_NODE_32252_length_248_cov_0.880000_g32134_i0 PRJNA849646 32252 248 0.88 2.1824 Evosea 2605435 Evosea other_Eukaryota 134 3.89e-36   NR KYQ96759.1 361077 g32134 i0 74.4 19.8387096774194 82 21 99.2 0 248 3 186 267 KYQ96759.1 delta-aminolevulinate dehydratase [Tieghemostelium lacteum] diamond 4920 134 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
18689592 18689592 PRJNA849646_P_NODE_32415_length_248_cov_0.880000_g32297_i0 PRJNA849646 32415 248 0.88 2.1824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 442 1.1399999999999995e-119   NTclustered gi|470505215|ref|XM_004348494.1| 1257118 g32297 i0 98.79 1 248 3 100 0 1 248 125 372 Acanthamoeba castellanii str. Neff epsilon subunit of coatomer protein complex isoform 1, putative (ACA1_158810), partial mRNA blastn 248 442 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19964631 19964631 PRJNA849646_P_NODE_24976_length_259_cov_1.655914_g24858_i0 PRJNA849646 24976 259 1.655914 4.28881726 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 337 5.82e-88   NTclustered gi|470510335|ref|XM_004351460.1| 1257118 g24858 i0 96.552 0.783783783783784 203 7 78 0 39 241 424 222 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_149020), partial mRNA blastn 203 337 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19964695 19964695 PRJNA849646_P_NODE_30276_length_250_cov_0.870056_g30158_i0 PRJNA849646 30276 250 0.870056 2.17514 Stemonaria longa 1258717 Evosea other_Eukaryota 215 2.73e-51   NTclustered gi|2616764619|gb|OR769388.1| 1258717 g30158 i0 99.16 27.816 119 1 48 0 1 119 4030 4148 Stemonaria longa voucher LE317506 small subunit ribosomal RNA gene, partial sequence blastn 6954 215 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonaria Stemonaria longa
22515071 22515071 PRJNA849646_P_NODE_34638_length_245_cov_1.790698_g34520_i0 PRJNA849646 34638 245 1.790698 4.3872101 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 344 3.26e-90   NTclustered gi|470454701|ref|XM_004340818.1| 1257118 g34520 i0 98.462 0.795918367346939 195 3 80 0 1 195 195 1 Acanthamoeba castellanii str. Neff ribosomal protein S12, putative (ACA1_151230), partial mRNA blastn 195 344 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29391839 29391839 PRJNA849646_P_NODE_35609_length_244_cov_1.736842_g35491_i0 PRJNA849646 35609 244 1.736842 4.23789448 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 144 1.47e-40   NR XP_004335792.1 1257118 g35491 i0 94.6 0.909836065573771 74 4 91 0 244 23 46 119 XP_004335792.1 CBS domain containing protein [Acanthamoeba castellanii str. Neff] diamond 222 144 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30474092 30474092 PRJNA849646_P_NODE_29333_length_251_cov_0.865169_g29215_i0 PRJNA849646 29333 251 0.865169 2.17157419 Acytosteliales 2058181 Evosea other_Eukaryota 55.8 1.02e-6   NR XP_004358157.1 261658 g29215 i0 38.6 1.9601593625498 83 46 93.2 2 18 251 178 260 XP_004358157.1 neurofibromin [Cavenderia fasciculata] diamond 492 55.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
31350576 31350576 PRJNA849646_P_NODE_27916_length_253_cov_2.111111_g27798_i0 PRJNA849646 27916 253 2.111111 5.34111083 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 59.3 6.24e-8   NR XP_004337728.1 1257118 g27798 i0 41.4 0.687747035573123 58 34 68.8 0 2 175 236 293 XP_004337728.1 uncharacterized protein ACA1_378750 [Acanthamoeba castellanii str. Neff] diamond 174 59.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32078005 32078005 PRJNA849646_P_NODE_25978_length_257_cov_1.673913_g25860_i0 PRJNA849646 25978 257 1.673913 4.30195641 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 61.2 1.36e-8   NR PRP80583.1 1890364 g25860 i0 33.7 1.07392996108949 92 52 96.9 2 257 9 102 193 PRP80583.1 hypothetical protein PROFUN_12345 [Planoprotostelium fungivorum] diamond 276 61.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;