RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA849172" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849172 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27947632 27947632 PRJNA849172_P_NODE_114725_length_236_cov_4.386503_g114365_i0 PRJNA849172 114725 236 4.386503 10.35214708 PVC group 1783257 Bacteria Bacteria 43.1 0.0241   NR MBQ7177734.1 2212475 g114365 i0 40.4 1.00423728813559 47 28 59.7 0 31 171 232 278 MBQ7177734.1 DUF4838 domain-containing protein [Victivallales bacterium] diamond 237 43.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
29399987 29399987 PRJNA849172_P_NODE_91329_length_251_cov_1.258427_g90969_i0 PRJNA849172 91329 251 1.258427 3.15865177 Bacteria 2 Bacteria Bacteria 90.5 6.39e-19   NR OGV61658.1 1798577 g90969 i0 58.5 4.94820717131474 82 29 94.4 2 14 250 551 630 OGV61658.1 MAG: hypothetical protein A3K18_06955 [Lentisphaerae bacterium RIFOXYA12_64_32] diamond 1242 91.3 0.991237677984666 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium RIFOXYA12_64_32

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;