RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA849172", tax_kingdom = "Thermotogati" and tax_phylum = "Thermotogota"

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tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA849172 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27750065 27750065 PRJNA849172_P_NODE_20824_length_452_cov_7.192612_g20465_i0 PRJNA849172 20824 452 7.192612 32.51060624 Oceanotoga sp. DSM 15 2108366 Bacteria Bacteria 96.7 1.39e-22   NR WP_264150751.1 2984951 g20465 i0 45.4 0.643805309734513 97 53 64.4 0 3 293 25 121 WP_264150751.1 hypothetical protein [Oceanotoga sp. DSM 15011] diamond 291 96.7 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Oceanotoga Oceanotoga sp. DSM 15011
29643920 29643920 PRJNA849172_P_NODE_99770_length_246_cov_2.687861_g99410_i0 PRJNA849172 99770 246 2.687861 6.61213806 Fervidobacterium sp. 1871331 Bacteria Bacteria 156 8.76e-46   NR MBP9518505.1 1871331 g99410 i0 100 1.97560975609756 81 0 98.8 0 244 2 2 82 MBP9518505.1 Na+/H+ antiporter subunit D [Fervidobacterium sp.] diamond 486 156 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
31603547 31603547 PRJNA849172_P_NODE_61556_length_279_cov_2.378641_g61196_i0 PRJNA849172 61556 279 2.378641 6.63640839 Petrotoga 28236 Bacteria Bacteria 88.6 5.85e-19   NR WP_158248363.1 28236 g61196 i0 66.7 0.645161290322581 60 20 64.5 0 182 3 5 64 WP_158248363.1 MULTISPECIES: ABC transporter permease [Petrotoga] diamond 180 88.6 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Petrotoga  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;