RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA849172", tax_kingdom = "Metazoa" and tax_phylum = "Placozoa"

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tax_superkingdom 1

tax_phylum 1

  • Placozoa · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA849172 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27276166 27276166 PRJNA849172_P_NODE_118983_length_232_cov_16.012579_g118623_i0 PRJNA849172 118983 232 16.012579 37.14918328 Trichoplax adhaerens 10228 Placozoa other_Eukaryota 49.3 9.99e-5   NR XP_002109121.1 10228 g118623 i0 45.6 0.737068965517241 57 25 73.7 1 231 61 152 202 XP_002109121.1 GTP-binding protein o-rab1 [Trichoplax adhaerens] diamond 171 49.3 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
29336902 29336902 PRJNA849172_P_NODE_30149_length_373_cov_19.086667_g29790_i0 PRJNA849172 30149 373 19.086667 71.19326791 Opisthokonta 33154 Placozoa other_Eukaryota 111 5.840000000000001e-26   NR RDD43826.1 287889 g29790 i0 59 8.32439678284182 83 34 66.8 0 373 125 348 430 RDD43826.1 Rab GDP dissociation inhibitor beta [Trichoplax sp. H2] diamond 3105 111 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax sp. H2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;