RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA849172", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA849172 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7215273 7215273 PRJNA849172_P_NODE_70346_length_269_cov_2.653061_g69986_i0 PRJNA849172 70346 269 2.653061 7.13673409 uncultured delta proteobacterium 34034 Bacteria Bacteria 261 3.76e-65   NTclustered gi|49035680|gb|AY632519.1| 34034 g69986 i0 99.306 52.5167286245353 144 1 54 0 1 144 321 464 Uncultured delta proteobacterium clone E1A9 16S ribosomal RNA gene, partial sequence blastn 14127 261 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
29865226 29865226 PRJNA849172_P_NODE_114971_length_236_cov_3.411043_g114611_i0 PRJNA849172 114971 236 3.411043 8.05006148 Microvenator marinus 2600177 Bacteria Bacteria 142 7.07e-39   NR WP_146962773.1 2600177 g114611 i0 89.7 1.98305084745763 78 8 99.2 0 2 235 234 311 WP_146962773.1 CpaF family protein [Microvenator marinus] diamond 468 142 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;