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contig_metadata

25 rows where bioproject = "PRJNA849172" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 25 ✖

bioproject 1

  • PRJNA849172 · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
834358 834358 PRJNA849172_P_NODE_111001_length_240_cov_2.520958_g110641_i0 PRJNA849172 111001 240 2.520958 6.0502992 Yamagishiella unicocca 51707 Plants Plants 52.8 0.022   NTclustered gi|1361864716|dbj|LC314413.1| 51707 g110641 i0 96.875 0.4 32 0 13 1 76 106 242883 242914 Yamagishiella unicocca DNA, mating locus, mating-type minus rearranged domain, strain: NIES-3983 blastn 96 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Yamagishiella Yamagishiella unicocca
2109780 2109780 PRJNA849172_P_NODE_109042_length_241_cov_14.208333_g108682_i0 PRJNA849172 109042 241 14.208333 34.24208253 Nannochloris normandinae 926285 Plants Plants 429 8.58e-116   NTclustered gi|922575245|gb|JQ921007.1| 926285 g108682 i0 98.755 109.643153526971 241 3 100 0 1 241 769 529 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 26424 429 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
2112113 2112113 PRJNA849172_P_NODE_54182_length_289_cov_1.222222_g53822_i0 PRJNA849172 54182 289 1.222222 3.53222158 Trebouxia 13786 Plants Plants 159 7.61e-43   NR KAL0033422.1 2905653 g53822 i0 96.4 2.6159169550173 84 3 87.2 0 2 253 955 1038 KAL0033422.1 hypothetical protein WJX77_008849 [Trebouxia sp. C0004] diamond 756 159 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004
4662643 4662643 PRJNA849172_P_NODE_105004_length_243_cov_7.670588_g104644_i0 PRJNA849172 105004 243 7.670588 18.63952884 Pseudochlorella signiensis 173497 Plants Plants 335 1.9399999999999993e-87   NTclustered gi|725650714|ref|NC_025529.1| 173497 g104644 i0 94.47 107.670781893004 217 12 89 0 27 243 150053 150269 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 26164 335 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
10160791 10160791 PRJNA849172_P_NODE_18428_length_482_cov_18.315403_g18069_i0 PRJNA849172 18428 482 18.315403 88.28024246 Chlorellales 35460 Plants Plants 143 2.71e-29   NTclustered gi|404276808|gb|JQ655149.1| 3077 g18069 i0 78.541 9.53319502074689 233 38 47 10 257 482 2128 1901 Chlorella vulgaris heat shock protein 90 mRNA, complete cds blastn 4595 143 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
10161560 10161560 PRJNA849172_P_NODE_86808_length_253_cov_20.494444_g86448_i0 PRJNA849172 86808 253 20.494444 51.85094332 Stichococcaceae 2910630 Plants Plants 457 4.16e-124   NTclustered gi|1518373087|gb|MK201750.1| 29647 g86448 i0 99.209 99.798418972332 253 2 100 0 1 253 792 1044 Stichococcus sp. strain KZ-5-1-1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25249 457 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
11039398 11039398 PRJNA849172_P_NODE_229_length_3290_cov_22.350948_g210_i0 PRJNA849172 229 3290 22.350948 735.3461892 Trebouxia 13786 Plants Plants 452 1.0299999999999996e-143   NR KAL0055962.1 2905655 g210 i0 52.3 1.20364741641337 434 195 39.4 3 267 1562 15 438 KAL0055962.1 hypothetical protein WJX82_006218 [Trebouxia sp. C0006] diamond 3960 455 0.993406593406593 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0006
13590927 13590927 PRJNA849172_P_NODE_72791_length_266_cov_17.321244_g72431_i0 PRJNA849172 72791 266 17.321244 46.07450904 Jenufa perforata 993091 Plants Plants 62.1 4.04e-5   NTclustered gi|1829768140|ref|NC_046779.1| 993091 g72431 i0 92.857 0.665413533834586 42 3 16 0 5 46 616 575 Jenufa perforata culture CAUP:H8101 mitochondrion, complete genome blastn 177 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa perforata
18687132 18687132 PRJNA849172_P_NODE_28555_length_383_cov_21.096774_g28196_i0 PRJNA849172 28555 383 21.096774 80.80064442 Chlamydomonas eustigma 1157962 Plants Plants 149 3.57e-41   NR GAX81966.1 1157962 g28196 i0 67.3 3.33681462140992 107 30 82.2 2 316 2 204 307 GAX81966.1 hypothetical protein CEUSTIGMA_g9394.t1 [Chlamydomonas eustigma] diamond 1278 149 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
19962679 19962679 PRJNA849172_P_NODE_40596_length_324_cov_10.988048_g40236_i0 PRJNA849172 40596 324 10.988048 35.60127552 Chromochloris zofingiensis 31302 Plants Plants 405 2.03e-108   NTclustered gi|674840721|ref|NC_024758.1| 31302 g40236 i0 89.231 1.00308641975309 325 33 99 2 1 323 40409 40733 Chromochloris zofingiensis strain UTEX 56 mitochondrion, complete genome blastn 325 405 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Chromochloridaceae Chromochloris Chromochloris zofingiensis
20358251 20358251 PRJNA849172_P_NODE_10956_length_644_cov_11.457093_g10604_i0 PRJNA849172 10956 644 11.457093 73.78367892 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 199 1.0699999999999995e-55   NR KAL4514472.1 1650286 g10604 i0 72.5 4.12267080745342 138 38 64.3 0 1 414 615 752 KAL4514472.1 hypothetical protein Ndes2526A_g03942 [Chlorella desiccata (nom. nud.)] diamond 2655 199 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
21236717 21236717 PRJNA849172_P_NODE_120377_length_231_cov_6.000000_g120017_i0 PRJNA849172 120377 231 6 13.86 Prototheca lentecrescens 2836214 Plants Plants 84.2 7.32e-12   NTclustered gi|2038040444|gb|MZ198751.1| 2836214 g120017 i0 79.339 11.8831168831169 121 23 52 2 14 133 1129 1010 Prototheca lentecrescens strain PK1 small subunit ribosomal RNA gene, partial sequence blastn 2745 84.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca lentecrescens
22910598 22910598 PRJNA849172_P_NODE_80878_length_259_cov_1.672043_g80518_i0 PRJNA849172 80878 259 1.672043 4.33059137 Borodinellopsis 1148059 Plants Plants 147 1.0500000000000001e-30   NTclustered gi|1509777659|gb|MG778126.1| 1148060 g80518 i0 94.792 34.4478764478764 96 2 36 3 123 215 19408 19313 Borodinellopsis texensis heme attachment to plastid cytochrome c (ccsA), photosystem II reaction center Z protein (psbZ), M protein of photosystem II (psbM), ribosomal protein S14 (rps14), ribosomal protein S7 (rps7), and ATP synthase CF1 epsilon subunit (atpE) genes, complete cds; tRNA-Leu (trnL-UAA) gene, complete sequence; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; tRNA-Asp (trnD-GUC) gene, complete sequence; CP47 chlorophyll apoprotein of photosystem II (psbB), hypothetical protein (psbB), photosystem II protein T (psbT), photosystem II protein N (psbN), and photosystem II protein H (psbH) genes, complete cds; tRNA-Glu (trnE-UUC) gene, complete sequence; and photosystem II protein V (psbE) and ribosomal protein S9 (rps9) genes, complete cds; chloroplast blastn 8922 147 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlorococcaceae Borodinellopsis Borodinellopsis texensis
25061926 25061926 PRJNA849172_P_NODE_2300_length_1453_cov_21.331884_g2134_i0 PRJNA849172 2300 1453 21.331884 309.95227452 Haematococcus lacustris 44745 Plants Plants 1297 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g2134 i0 83.391 245.563661390227 1445 195 98 39 3 1427 3556 2137 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 356804 1297 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
25062603 25062603 PRJNA849172_P_NODE_45760_length_308_cov_14.051064_g45400_i0 PRJNA849172 45760 308 14.051064 43.27727712 Chlamydomonas reinhardtii 3055 Plants Plants 219 2.68e-52   NTclustered gi|18243|emb|X60826.1| 3055 g45400 i0 85.577 18.5551948051948 208 30 68 0 101 308 399 192 C.reinhardtii UBI3 mRNA for ubiquitin-fusion protein (UbCEP52) blastn 5715 219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
27655279 27655279 PRJNA849172_P_NODE_133764_length_215_cov_11.936620_g133404_i0 PRJNA849172 133764 215 11.93662 25.663733 Chlamydomonas sp. UWO 241 1653778 Plants Plants 53.9 7.17e-7   NR KAG1677435.1 1653778 g133404 i0 72.2 1.0046511627907 36 10 50.2 0 3 110 112 147 KAG1677435.1 hypothetical protein FOA52_001890 [Chlamydomonas sp. UWO 241] diamond 216 53.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. UWO 241
28389574 28389574 PRJNA849172_P_NODE_9086_length_718_cov_33.730233_g8742_i0 PRJNA849172 9086 718 33.730233 242.18307294 Trebouxiales 2507901 Plants Plants 75.5 1.45e-11   NR CAL5228944.1 1274662 g8742 i0 71.2 0.86908077994429 59 17 24.7 0 177 353 846 904 CAL5228944.1 g12175 [Coccomyxa viridis] diamond 624 75.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
28539370 28539370 PRJNA849172_P_NODE_120607_length_231_cov_4.379747_g120247_i0 PRJNA849172 120607 231 4.379747 10.11721557 Coccomyxa viridis 1274662 Plants Plants 65.5 2.75e-11   NR CAK0783664.1 1274662 g120247 i0 47.5 4.06493506493506 80 36 98.7 3 230 3 1 78 CAK0783664.1 60S ribosomal protein L36A [Coccomyxa viridis] diamond 939 65.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
28697211 28697211 PRJNA849172_P_NODE_22747_length_431_cov_11.547486_g22388_i0 PRJNA849172 22747 431 11.547486 49.76966466 Prototheca wickerhamii 3111 Plants Plants 187 1.5399999999999998e-57   NR KAK2079457.1 3111 g22388 i0 70 3.54292343387471 130 38 89.8 1 16 402 75 204 KAK2079457.1 60S ribosomal protein L15-2 [Prototheca wickerhamii] diamond 1527 187 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
28886389 28886389 PRJNA849172_P_NODE_7968_length_771_cov_23.249284_g7631_i0 PRJNA849172 7968 771 23.249284 179.25197964 Apatococcus lobatus 904363 Plants Plants 240 2.24e-68   NR KAK9818626.1 904363 g7631 i0 81.4 0.56420233463035 145 27 56.4 0 3 437 2364 2508 KAK9818626.1 hypothetical protein WJX74_004201 [Apatococcus lobatus] diamond 435 240 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Apatococcus Apatococcus lobatus
29517899 29517899 PRJNA849172_P_NODE_61150_length_279_cov_11.922330_g60790_i0 PRJNA849172 61150 279 11.92233 33.2633007 Coccomyxa subellipsoidea C-169 574566 Plants Plants 79 1.83e-16   NR XP_005644184.1 574566 g60790 i0 94.3 0.752688172043011 35 2 37.6 0 2 106 93 127 XP_005644184.1 hypothetical protein COCSUDRAFT_25684 [Coccomyxa subellipsoidea C-169] diamond 210 79 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
31034579 31034579 PRJNA849172_P_NODE_1235_length_1863_cov_22.570391_g1133_i0 PRJNA849172 1235 1863 22.570391 420.48638433 Raphidocelis subcapitata 307507 Plants Plants 68.2 6.9e-8   NR GBF94470.1 307507 g1133 i0 36 0.183574879227053 114 36 12.4 2 502 732 108 221 GBF94470.1 hypothetical protein Rsub_07004 [Raphidocelis subcapitata] diamond 342 68.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
31034615 31034615 PRJNA849172_P_NODE_25515_length_406_cov_28.696697_g25156_i0 PRJNA849172 25515 406 28.696697 116.50858982 Bryopsis sp. KO-2 3115439 Plants Plants 61.6 5.59e-8   NR GMH35908.1 3041901 g25156 i0 42.4 0.487684729064039 66 38 48.8 0 34 231 386 451 GMH35908.1 hypothetical protein BSKO_03776 [Bryopsis sp. KO-2023] diamond 198 61.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
32362949 32362949 PRJNA849172_P_NODE_11579_length_624_cov_11.911071_g11225_i0 PRJNA849172 11579 624 11.911071 74.32508304 Volvox reticuliferus 1737510 Plants Plants 51.6 8.8e-4   NR GIL87948.1 1737510 g11225 i0 29.1 0.990384615384615 206 72 66.8 7 75 491 254 452 GIL87948.1 hypothetical protein Vretifemale_15997 [Volvox reticuliferus] diamond 618 51.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox reticuliferus
32678286 32678286 PRJNA849172_P_NODE_108200_length_242_cov_1.822485_g107840_i0 PRJNA849172 108200 242 1.822485 4.4104137 Chlamydomonas sp. UWO 241 1653778 Plants Plants 67 1.03e-10   NR KAG1678522.1 1653778 g107840 i0 53.8 0.644628099173554 52 24 64.5 0 85 240 365 416 KAG1678522.1 hypothetical protein FOA52_014556 [Chlamydomonas sp. UWO 241] diamond 156 67 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. UWO 241

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;