RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA849172", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA849172 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2507552 2507552 PRJNA849172_P_NODE_131182_length_219_cov_6.965753_g130822_i0 PRJNA849172 131182 219 6.965753 15.25499907 Paracercomonas 372085 SAR_Eukaryotes SAR_Eukaryotes 405 1.29e-108   NTclustered gi|262262835|gb|FJ790728.1| 686750 g130822 i0 100 100.123287671233 219 0 100 0 1 219 695 913 Paracercomonas ambulans strain W80 18S ribosomal RNA gene, partial sequence blastn 21927 405 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas ambulans
19960591 19960591 PRJNA849172_P_NODE_103056_length_244_cov_6.479532_g102696_i0 PRJNA849172 103056 244 6.479532 15.81005808 Protaspis grandis 361427 SAR_Eukaryotes SAR_Eukaryotes 263 9.34e-66   NTclustered gi|290760486|gb|GQ144689.1| 361427 g102696 i0 89.423 73.0204918032787 208 22 85 0 34 241 1746 1953 Protaspis grandis large subunit ribosomal RNA gene, partial sequence blastn 17817 263 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Protaspis Protaspis grandis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;