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contig_metadata

19 rows where bioproject = "PRJNA849172", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 19 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 19 ✖

bioproject 1

  • PRJNA849172 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3385510 3385510 PRJNA849172_P_NODE_125483_length_227_cov_5.623377_g125123_i0 PRJNA849172 125483 227 5.623377 12.76506579 Caenorhabditis elegans 6239 Nematoda Nematoda 62.1 3.36e-5   NTclustered gi|687865708|emb|LK927636.1| 6239 g125123 i0 89.583 1.60352422907489 48 5 21 0 79 126 146701 146748 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000096 blastn 364 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14865009 14865009 PRJNA849172_P_NODE_67172_length_272_cov_20.417085_g66812_i0 PRJNA849172 67172 272 20.417085 55.5344712 Necator americanus 51031 Nematoda Nematoda 80.5 1.14e-10   NTclustered gi|2707542684|ref|XM_013436844.2| 51031 g66812 i0 84.337 0.580882352941177 83 12 30 1 57 138 439 521 Necator americanus uncharacterized protein (RB195_005447), partial mRNA blastn 158 80.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
18687067 18687067 PRJNA849172_P_NODE_26435_length_399_cov_16.092025_g26076_i0 PRJNA849172 26435 399 16.092025 64.20717975 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 137 2e-34   NR CAD5216646.1 6326 g26076 i0 57.3 13.2556390977444 131 40 88.7 3 397 44 686 813 CAD5216646.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 5289 138 0.992753623188406 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
19083465 19083465 PRJNA849172_P_NODE_117895_length_233_cov_9.512500_g117535_i0 PRJNA849172 117895 233 9.5125 22.164125 Oscheius 42476 Nematoda Nematoda 429 8.239999999999998e-116   NTclustered gi|158827543|gb|EU196009.1| 141969 g117535 i0 100 98.3261802575107 232 0 99 0 1 232 501 732 Oscheius tipulae strain CEW1 18S ribosomal RNA gene, partial sequence blastn 22910 429 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius tipulae
26810071 26810071 PRJNA849172_P_NODE_18861_length_476_cov_26.657568_g18502_i0 PRJNA849172 18861 476 26.657568 126.89002368 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 45.4 0.00574   NR CDW51882.1 36087 g18502 i0 32.9 1.89075630252101 76 40 41 3 75 269 10 85 CDW51882.1 hypothetical protein TTRE_0000014101 [Trichuris trichiura] diamond 900 45.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
26991336 26991336 PRJNA849172_P_NODE_6002_length_897_cov_32.117718_g5705_i0 PRJNA849172 6002 897 32.117718000000004 288.09593046 Auanema sp. JU1783 2878363 Nematoda Nematoda 191 1.9e-55   NR CAI4232085.1 2878363 g5705 i0 70.7 0.468227424749164 140 40 46.5 1 469 53 138 277 CAI4232085.1 unnamed protein product [Auanema sp. JU1783] diamond 420 191 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
27244512 27244512 PRJNA849172_P_NODE_96763_length_248_cov_0.891429_g96403_i0 PRJNA849172 96763 248 0.891429 2.21074392 Wuchereria bancrofti 6293 Nematoda Nematoda 134 3.39e-34   NR VDM09255.1 6293 g96403 i0 97.1 0.846774193548387 70 2 84.7 0 211 2 772 841 VDM09255.1 unnamed protein product [Wuchereria bancrofti] diamond 210 134 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
27655334 27655334 PRJNA849172_P_NODE_72964_length_266_cov_4.787565_g72604_i0 PRJNA849172 72964 266 4.787565 12.7349229 Diploscapter pachys 2018661 Nematoda Nematoda 72.4 1.75e-12   NR PAV77616.1 2018661 g72604 i0 79.1 0.484962406015038 43 9 48.5 0 264 136 345 387 PAV77616.1 hypothetical protein WR25_25479 [Diploscapter pachys] diamond 129 72.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
28570667 28570667 PRJNA849172_P_NODE_5807_length_913_cov_27.445238_g5512_i0 PRJNA849172 5807 913 27.445238 250.57502294 Brugia timori 42155 Nematoda Nematoda 233 5.15e-69   NR VDO07297.1 42155 g5512 i0 51.7 0.762322015334064 232 111 76.2 1 216 911 29 259 VDO07297.1 unnamed protein product [Brugia timori] diamond 696 233 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia timori
28863134 28863134 PRJNA849172_P_NODE_85668_length_254_cov_17.016575_g85308_i0 PRJNA849172 85668 254 17.016575 43.2221005 Rhabditida 6236 Nematoda Nematoda 100 1.5100000000000001e-22   NR XP_045094528.1 6238 g85308 i0 74.2 6.59055118110236 62 16 73.2 0 30 215 807 868 XP_045094528.1 Protein CBG11440 [Caenorhabditis briggsae] diamond 1674 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
29021471 29021471 PRJNA849172_P_NODE_68068_length_271_cov_16.505051_g67708_i0 PRJNA849172 68068 271 16.505051 44.72868821 root 1 Root_unresolved Root_unresolved 84.3 9.73e-17   NR VDO07293.1 42155 g67708 i0 59.7 1.38376383763838 62 25 68.6 0 191 6 2 63 VDO07293.1 unnamed protein product [Brugia timori] diamond 375 84.7 0.995277449822904 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia timori
29265167 29265167 PRJNA849172_P_NODE_26969_length_395_cov_8.757764_g26610_i0 PRJNA849172 26969 395 8.757764 34.5931678 Steinernema hermaphroditum 289476 Nematoda Nematoda 120 1.8399999999999998e-31   NR KAK0400363.1 289476 g26610 i0 58.6 1.70126582278481 116 45 86.6 2 380 39 72 186 KAK0400363.1 hypothetical protein QR680_003462 [Steinernema hermaphroditum] diamond 672 120 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
30939725 30939725 PRJNA849172_P_NODE_89934_length_251_cov_13.292135_g89574_i0 PRJNA849172 89934 251 13.292135 33.36325885 Toxocara canis 6265 Nematoda Nematoda 95.5 1.91e-22   NR KHN80588.1 6265 g89574 i0 52.1 4.31474103585657 73 35 87.3 0 228 10 115 187 KHN80588.1 Lipopolysaccharide-induced tumor necrosis factor-alpha factor -like protein [Toxocara canis] diamond 1083 95.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
31034667 31034667 PRJNA849172_P_NODE_98095_length_247_cov_2.143678_g97735_i0 PRJNA849172 98095 247 2.143678 5.29488466 Brugia timori 42155 Nematoda Nematoda 78.6 8.25e-15   NR VDO07293.1 42155 g97735 i0 50 0.97165991902834 80 39 97.2 1 3 242 53 131 VDO07293.1 unnamed protein product [Brugia timori] diamond 240 78.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia timori
31382180 31382180 PRJNA849172_P_NODE_6116_length_889_cov_30.985294_g5815_i0 PRJNA849172 6116 889 30.985294 275.45926366 Diploscapter pachys 2018661 Nematoda Nematoda 243 6.300000000000002e-78   NR PAV75779.1 2018661 g5815 i0 89.6 0.455568053993251 135 14 45.6 0 782 378 1 135 PAV75779.1 hypothetical protein WR25_11724 [Diploscapter pachys] diamond 405 243 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
31833040 31833040 PRJNA849172_P_NODE_50977_length_293_cov_10.563636_g50617_i0 PRJNA849172 50977 293 10.563636 30.95145348 Metazoa 33208 Nematoda Nematoda 73.2 9.66e-13   NR CDW51849.1 36087 g50617 i0 58.2 8.43686006825939 55 23 56.3 0 204 40 159 213 CDW51849.1 gephyrin [Trichuris trichiura] diamond 2472 73.9 0.990527740189445 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
31888061 31888061 PRJNA849172_P_NODE_87277_length_253_cov_3.216667_g86917_i0 PRJNA849172 87277 253 3.216667 8.13816751 Auanema sp. JU1783 2878363 Nematoda Nematoda 65.1 5.26e-10   NR CAI4229567.1 2878363 g86917 i0 34.4 1.13833992094862 96 49 97.2 2 4 249 81 176 CAI4229567.1 unnamed protein product [Auanema sp. JU1783] diamond 288 65.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
32552892 32552892 PRJNA849172_P_NODE_5799_length_914_cov_16.525565_g5504_i0 PRJNA849172 5799 914 16.525565 151.0436641 Diploscapter pachys 2018661 Nematoda Nematoda 322 4.03e-108   NR PAV74583.1 2018661 g5504 i0 96.3 0.62691466083151 191 7 62.7 0 680 108 1 191 PAV74583.1 hypothetical protein WR25_26826 [Diploscapter pachys] diamond 573 322 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
32592549 32592549 PRJNA849172_P_NODE_82519_length_257_cov_3.945652_g82159_i0 PRJNA849172 82519 257 3.945652 10.14032564 Rhabditida 6236 Nematoda Nematoda 78.2 1.5e-14   NR VDM24620.1 6265 g82159 i0 71.2 3.2568093385214 52 15 60.7 0 158 3 323 374 VDM24620.1 unnamed protein product [Toxocara canis] diamond 837 78.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;