RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA849172", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA849172 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28547751 28547751 PRJNA849172_P_NODE_69827_length_270_cov_1.467005_g69467_i0 PRJNA849172 69827 270 1.467005 3.9609135 Methanomada group 2283794 Archaea Archaea 52.8 3.63e-6   NR MEN6292523.1 2164 g69467 i0 37.1 1.33333333333333 62 39 68.9 0 83 268 1 62 MEN6292523.1 hypothetical protein [Methanobacterium sp.] diamond 360 53.1 0.994350282485876 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
30663480 30663480 PRJNA849172_P_NODE_93333_length_250_cov_0.875706_g92973_i0 PRJNA849172 93333 250 0.875706 2.189265 root 1 Root_unresolved Root_unresolved 117 6.28e-30   NR MBR3140321.1 66852 g92973 i0 67.5 15.936 83 27 99.6 0 2 250 155 237 MBR3140321.1 glucose-1-phosphate thymidylyltransferase RfbA [Methanobrevibacter sp.] diamond 3984 118 0.991525423728814 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;