RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA849172", tax_clade = "FCB group" and tax_phylum = "Candidatus Kapaibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Kapaibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA849172 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28452953 28452953 PRJNA849172_P_NODE_98046_length_247_cov_2.304598_g97686_i0 PRJNA849172 98046 247 2.304598 5.69235706 Bacteria 2 Bacteria Bacteria 80.1 1e-16   NR HZV12756.1 2447898 g97686 i0 60.9 2.34412955465587 64 25 77.7 0 246 55 87 150 HZV12756.1 MarR family transcriptional regulator [Candidatus Kapaibacterium sp.] diamond 579 80.5 0.995031055900621 Bacteria FCB group Pseudomonadati Candidatus Kapaibacteriota Candidatus Kapaibacteriia Candidatus Kapaibacteriales Candidatus Kapaibacteriaceae Candidatus Kapaibacterium Candidatus Kapaibacterium sp.
28697246 28697246 PRJNA849172_P_NODE_83147_length_257_cov_1.684783_g82787_i0 PRJNA849172 83147 257 1.684783 4.32989231 Candidatus Kapaibacterium sp. 2447898 Bacteria Bacteria 113 6.25e-28   NR MFN9340425.1 2447898 g82787 i0 62.4 2.97665369649805 85 32 99.2 0 257 3 41 125 MFN9340425.1 TonB-dependent receptor [Candidatus Kapaibacterium sp.] diamond 765 113 1 Bacteria FCB group Pseudomonadati Candidatus Kapaibacteriota Candidatus Kapaibacteriia Candidatus Kapaibacteriales Candidatus Kapaibacteriaceae Candidatus Kapaibacterium Candidatus Kapaibacterium sp.
29991743 29991743 PRJNA849172_P_NODE_78931_length_260_cov_11.267380_g78571_i0 PRJNA849172 78931 260 11.26738 29.295188 Candidatus Kapaibacterium thiocyanatum 1895771 Bacteria Bacteria 184 1.53e-54   NR MBN9399541.1 1895771 g78571 i0 98.8 0.992307692307692 86 1 99.2 0 3 260 244 329 MBN9399541.1 PQQ-dependent sugar dehydrogenase [Candidatus Kapaibacterium thiocyanatum] diamond 258 184 1 Bacteria FCB group Pseudomonadati Candidatus Kapaibacteriota Candidatus Kapaibacteriia Candidatus Kapaibacteriales Candidatus Kapaibacteriaceae Candidatus Kapaibacterium Candidatus Kapaibacterium thiocyanatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;