RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA849172", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 11 ✖

tax_clade 1

  • Bacteria candidate phyla · 11 ✖

bioproject 1

  • PRJNA849172 · 11 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2113288 2113288 PRJNA849172_P_NODE_95042_length_249_cov_0.886364_g94682_i0 PRJNA849172 95042 249 0.886364 2.20704636 Minisyncoccota bacterium 2053589 Bacteria Bacteria 150 2.319999999999999e-41   NR HWH07155.1 2053589 g94682 i0 86.6 0.987951807228916 82 11 98.8 0 248 3 58 139 HWH07155.1 transcription termination factor NusA [Candidatus Paceibacterota bacterium] diamond 246 150 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
8489523 8489523 PRJNA849172_P_NODE_55567_length_287_cov_1.439252_g55207_i0 PRJNA849172 55567 287 1.439252 4.13065324 Minisyncoccota bacterium 2053589 Bacteria Bacteria 88.6 4.93e-18   NR MEX0595699.1 2053589 g55207 i0 45.9 0.888501742160279 85 46 88.9 0 3 257 305 389 MEX0595699.1 DNA polymerase [Candidatus Paceibacterota bacterium] diamond 255 88.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
21236308 21236308 PRJNA849172_P_NODE_105657_length_243_cov_2.752941_g105297_i0 PRJNA849172 105657 243 2.752941 6.68964663 Minisyncoccota bacterium 2053589 Bacteria Bacteria 72 1.86e-12   NR HEV3245287.1 2053589 g105297 i0 68.9 0.555555555555556 45 14 55.6 0 243 109 43 87 HEV3245287.1 FG-GAP-like repeat-containing protein [Candidatus Paceibacterota bacterium] diamond 135 72 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
26959704 26959704 PRJNA849172_P_NODE_101222_length_245_cov_5.000000_g100862_i0 PRJNA849172 101222 245 5 12.25 Minisyncoccota bacterium 2053589 Bacteria Bacteria 119 2.51e-30   NR HRZ86159.1 2053589 g100862 i0 66.7 0.991836734693878 81 27 99.2 0 244 2 71 151 HRZ86159.1 ribonuclease H-like domain-containing protein [Candidatus Paceibacterota bacterium] diamond 243 119 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27379506 27379506 PRJNA849172_P_NODE_75583_length_264_cov_1.623037_g75223_i0 PRJNA849172 75583 264 1.623037 4.28481768 Bacteria 2 Bacteria Bacteria 129 3.94e-37   NR HEY0010422.1 2053589 g75223 i0 85.5 2.85227272727273 83 12 94.3 0 12 260 1 83 HEY0010422.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 753 130 0.992307692307692 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27750077 27750077 PRJNA849172_P_NODE_51384_length_293_cov_1.059091_g51024_i0 PRJNA849172 51384 293 1.059091 3.10313663 Minisyncoccota bacterium 2053589 Bacteria Bacteria 87.8 7.44e-18   NR MDP6527679.1 2053589 g51024 i0 50.5 0.972696245733788 95 42 92.2 2 293 24 132 226 MDP6527679.1 DNA (cytosine-5-)-methyltransferase [Candidatus Paceibacterota bacterium] diamond 285 87.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28602387 28602387 PRJNA849172_P_NODE_131407_length_219_cov_5.061644_g131047_i0 PRJNA849172 131407 219 5.061644 11.08500036 Minisyncoccota bacterium 2053589 Bacteria Bacteria 58.5 7.1e-9   NR HAV15428.1 2053589 g131047 i0 67.4 1.17808219178082 43 14 58.9 0 3 131 76 118 HAV15428.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 258 58.5 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29391825 29391825 PRJNA849172_P_NODE_96409_length_248_cov_1.771429_g96049_i0 PRJNA849172 96409 248 1.771429 4.39314392 Candidatus Pacebacteria bacterium CG_4_1 1974759 Bacteria Bacteria 115 2.5199999999999997e-30   NR PIY80114.1 1974759 g96049 i0 75 0.82258064516129 68 17 82.3 0 248 45 119 186 PIY80114.1 MAG: non-canonical purine NTP pyrophosphatase [Candidatus Pacebacteria bacterium CG_4_10_14_0_8_um_filter_42_14] diamond 204 115 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Candidatus Pacebacteria bacterium CG_4_10_14_0_8_um_filter_42_14
31445328 31445328 PRJNA849172_P_NODE_67096_length_273_cov_1.325000_g66736_i0 PRJNA849172 67096 273 1.325 3.61725 Minisyncoccota bacterium 2053589 Bacteria Bacteria 57.4 3.4e-8   NR HEX8591262.1 2053589 g66736 i0 64.4 1.05494505494505 45 15 49.5 1 136 2 1 44 HEX8591262.1 50S ribosomal protein L23 [Candidatus Paceibacterota bacterium] diamond 288 57.4 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32552837 32552837 PRJNA849172_P_NODE_108179_length_242_cov_1.834320_g107819_i0 PRJNA849172 108179 242 1.83432 4.4390544 Minisyncoccota bacterium 2053589 Bacteria Bacteria 69.7 9.34e-12   NR MFA6274472.1 2053589 g107819 i0 46.6 3.81818181818182 73 35 86.8 2 230 21 282 353 MFA6274472.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 924 69.7 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32678353 32678353 PRJNA849172_P_NODE_65580_length_274_cov_3.636816_g65220_i0 PRJNA849172 65580 274 3.636816 9.96487584 Minisyncoccota bacterium 2053589 Bacteria Bacteria 103 2.88e-24   NR HRZ86159.1 2053589 g65220 i0 59.8 1.06204379562044 97 30 96.4 1 5 268 156 252 HRZ86159.1 ribonuclease H-like domain-containing protein [Candidatus Paceibacterota bacterium] diamond 291 103 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;