RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA849172", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA849172 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1232072 1232072 PRJNA849172_P_NODE_136141_length_212_cov_7.000000_g135781_i0 PRJNA849172 136141 212 7 14.84 Vermamoeba 1260114 Tubulinea other_Eukaryota 392 9.67e-105   NTclustered gi|909719645|gb|KT185625.1| 5778 g135781 i0 100 60.0188679245283 212 0 100 0 1 212 5175 5386 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 12724 392 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7215596 7215596 PRJNA849172_P_NODE_81646_length_258_cov_2.529730_g81286_i0 PRJNA849172 81646 258 2.52973 6.5267034 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 160 1.46e-44   NR YP_003540812.1 5778 g81286 i0 100 0.988372093023256 85 0 98.8 0 3 257 329 413 YP_003540812.1 ATP synthase F1 subunit alpha [Vermamoeba vermiformis] diamond 255 160 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8885381 8885381 PRJNA849172_P_NODE_23247_length_426_cov_18.407932_g22888_i0 PRJNA849172 23247 426 18.407932 78.41779032 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 601 3.2499999999999995e-167   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g22888 i0 92.13 48.1291079812207 432 25 100 8 1 426 1311 1739 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 20503 601 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
14862322 14862322 PRJNA849172_P_NODE_11172_length_637_cov_37.810284_g10820_i0 PRJNA849172 11172 637 37.810284 240.85150908 Tubulinea group 04 sp. P18 1215998 Tubulinea other_Eukaryota 1040 0   NTclustered gi|399764278|gb|JQ271789.1| 1215998 g10820 i0 96.94 28.2339089481947 621 17 97 2 17 636 626 7 Tubulinea group 04 sp. P18 18S ribosomal RNA gene, partial sequence blastn 17985 1040 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. P18
16139599 16139599 PRJNA849172_P_NODE_59473_length_281_cov_13.081731_g59113_i0 PRJNA849172 59473 281 13.081731 36.75966411 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 255 1.84e-63   NTclustered gi|511487963|gb|JX898537.1| 1260765 g59113 i0 85.156 12.1886120996441 256 31 90 7 3 255 252 1 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 3425 255 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
18687913 18687913 PRJNA849172_P_NODE_54295_length_288_cov_7.720930_g53935_i0 PRJNA849172 54295 288 7.72093 22.2362784 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 344 3.929999999999999e-90   NTclustered gi|145386791|gb|EF216916.1| 136459 g53935 i0 88.542 45.3715277777778 288 28 99 5 2 288 317 34 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 13067 344 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
22909620 22909620 PRJNA849172_P_NODE_13158_length_581_cov_24.940945_g12800_i0 PRJNA849172 13158 581 24.940945 144.90689045 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 787 0   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g12800 i0 91.186 46.7693631669535 590 37 100 11 1 581 611 28 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 27173 791 0.994943109987358 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
27592136 27592136 PRJNA849172_P_NODE_29144_length_379_cov_22.620915_g28785_i0 PRJNA849172 29144 379 22.620915 85.73326785 Amoeba proteus 5775 Tubulinea other_Eukaryota 171 5.5e-49   NR AAP88974.1 5775 g28785 i0 78.8 3.14248021108179 99 21 78.4 0 376 80 292 390 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 1191 171 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;