RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

28 rows where bioproject = "PRJNA846486", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 28 ✖

tax_phylum 1

  • Myxococcota · 28 ✖

tax_kingdom 1

bioproject 1

  • PRJNA846486 · 28 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10159952 10159952 PRJNA846486_P_NODE_55268_length_191_cov_1.021127_g55172_i0 PRJNA846486 55268 191 1.021127 1.95035257 Corallococcus 83461 Bacteria Bacteria 154 4.38e-33   NTclustered gi|337255776|gb|CP002830.1| 35 g55172 i0 81.675 1.99476439790576 191 30 98 5 1 187 4455011 4455200 Myxococcus macrosporus strain HW-1, complete genome blastn 381 154 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus
10159982 10159982 PRJNA846486_P_NODE_86508_length_165_cov_0.896552_g86412_i0 PRJNA846486 86508 165 0.896552 1.4793108 Polyangiaceae bacterium 2268199 Bacteria Bacteria 90.5 1.78e-19   NR HVJ14543.1 2268199 g86412 i0 75.9 2.89090909090909 54 13 98.2 0 1 162 241 294 HVJ14543.1 DUF4055 domain-containing protein [Polyangiaceae bacterium] diamond 477 90.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
13586986 13586986 PRJNA846486_P_NODE_79651_length_168_cov_0.873950_g79555_i0 PRJNA846486 79651 168 0.87395 1.468236 Myxococcales bacterium 2026763 Bacteria Bacteria 95.1 4.920000000000001e-21   NR MBL0197464.1 2026763 g79555 i0 82.1 1 56 10 100 0 168 1 41 96 MBL0197464.1 ATP-dependent DNA helicase [Myxococcales bacterium] diamond 168 95.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
26706319 26706319 PRJNA846486_P_NODE_93501_length_162_cov_0.920354_g93405_i0 PRJNA846486 93501 162 0.920354 1.49097348 Polyangiaceae bacterium 2268199 Bacteria Bacteria 50.1 4.22e-6   NR NUP12898.1 2268199 g93405 i0 50 0.814814814814815 44 22 81.5 0 2 133 13 56 NUP12898.1 hypothetical protein [Polyangiaceae bacterium] diamond 132 50.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
26801506 26801506 PRJNA846486_P_NODE_75221_length_170_cov_0.859504_g75125_i0 PRJNA846486 75221 170 0.859504 1.4611568 Myxococcales bacterium 2026763 Bacteria Bacteria 60.1 1.05e-8   NR MCB9507964.1 2026763 g75125 i0 57.1 0.988235294117647 56 24 98.8 0 2 169 105 160 MCB9507964.1 hypothetical protein [Myxococcales bacterium] diamond 168 60.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
26936538 26936538 PRJNA846486_P_NODE_79182_length_168_cov_0.873950_g79086_i0 PRJNA846486 79182 168 0.87395 1.468236 Myxococcia 32015 Bacteria Bacteria 99 1.18e-22   NR MBL8600617.1 2026763 g79086 i0 80 3.92857142857143 55 11 98.2 0 2 166 61 115 MBL8600617.1 hypothetical protein [Myxococcales bacterium] diamond 660 99 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28042363 28042363 PRJNA846486_P_NODE_42745_length_210_cov_1.291925_g42649_i0 PRJNA846486 42745 210 1.291925 2.7130425 Myxococcia 32015 Bacteria Bacteria 136 1.48e-36   NR MBK6463537.1 2026763 g42649 i0 94.3 3 70 4 100 0 1 210 27 96 MBK6463537.1 hypothetical protein [Myxococcales bacterium] diamond 630 136 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28065491 28065491 PRJNA846486_P_NODE_84865_length_165_cov_1.793103_g84769_i0 PRJNA846486 84865 165 1.793103 2.95861995 Myxococcales bacterium 2026763 Bacteria Bacteria 77.4 3.51e-15   NR MDO9016551.1 2026763 g84769 i0 65.5 1 55 18 98.2 1 3 164 75 129 MDO9016551.1 DNA circularization N-terminal domain-containing protein [Myxococcales bacterium] diamond 165 77.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28223169 28223169 PRJNA846486_P_NODE_14806_length_326_cov_1.555957_g14710_i0 PRJNA846486 14806 326 1.555957 5.07241982 Archangium sp. 1872627 Bacteria Bacteria 129 2.76e-32   NR HYO71604.1 1872627 g14710 i0 69.4 1.80368098159509 98 30 90.2 0 294 1 435 532 HYO71604.1 AAA family ATPase [Archangium sp.] diamond 588 129 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
28539330 28539330 PRJNA846486_P_NODE_82087_length_167_cov_0.881356_g81991_i0 PRJNA846486 82087 167 0.881356 1.47186452 Myxococcaceae bacterium 2484252 Bacteria Bacteria 95.9 2.44e-21   NR MBL8952514.1 2484252 g81991 i0 78.2 0.988023952095808 55 12 98.8 0 2 166 303 357 MBL8952514.1 FHA domain-containing protein [Myxococcaceae bacterium] diamond 165 95.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
29013028 29013028 PRJNA846486_P_NODE_76568_length_169_cov_0.866667_g76472_i0 PRJNA846486 76568 169 0.866667 1.46466723 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 48.1 4.32e-5   NR MBA2540568.1 2026735 g76472 i0 47.2 0.940828402366864 53 27 92.3 1 11 166 29 81 MBA2540568.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 159 48.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29076020 29076020 PRJNA846486_P_NODE_91408_length_163_cov_0.912281_g91312_i0 PRJNA846486 91408 163 0.912281 1.48701803 Polyangiaceae bacterium 2268199 Bacteria Bacteria 43.9 0.00473   NR MEZ4225955.1 2268199 g91312 i0 51.1 0.865030674846626 47 23 86.5 0 148 8 119 165 MEZ4225955.1 hypothetical protein [Polyangiaceae bacterium] diamond 141 43.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29770337 29770337 PRJNA846486_P_NODE_78491_length_168_cov_1.117647_g78395_i0 PRJNA846486 78491 168 1.117647 1.87764696 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 40.8 0.0335   NR MFK7987570.1 2510337 g78395 i0 45.5 0.589285714285714 33 15 58.9 1 167 69 65 94 MFK7987570.1 hypothetical protein [Sandaracinaceae bacterium] diamond 99 40.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium
30054598 30054598 PRJNA846486_P_NODE_81071_length_167_cov_0.881356_g80975_i0 PRJNA846486 81071 167 0.881356 1.47186452 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 68.6 1.04e-11   NR MBV8357467.1 2026735 g80975 i0 81.6 1.36526946107784 38 7 68.3 0 48 161 597 634 MBV8357467.1 DNA polymerase I [Deltaproteobacteria bacterium] diamond 228 68.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30117829 30117829 PRJNA846486_P_NODE_79312_length_168_cov_0.873950_g79216_i0 PRJNA846486 79312 168 0.87395 1.468236 Myxococcales bacterium 2026763 Bacteria Bacteria 77 1.09e-14   NR MBL0197447.1 2026763 g79216 i0 97.1 0.625 35 1 62.5 0 1 105 438 472 MBL0197447.1 hypothetical protein [Myxococcales bacterium] diamond 105 77 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30560057 30560057 PRJNA846486_P_NODE_91373_length_163_cov_0.912281_g91277_i0 PRJNA846486 91373 163 0.912281 1.48701803 Myxococcaceae bacterium 2484252 Bacteria Bacteria 63.9 3.39e-10   NR MFO0599253.1 2484252 g91277 i0 62.7 1.84049079754601 51 19 93.9 0 157 5 44 94 MFO0599253.1 hypothetical protein [Myxococcaceae bacterium] diamond 300 63.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
30686524 30686524 PRJNA846486_P_NODE_65373_length_179_cov_1.200000_g65277_i0 PRJNA846486 65373 179 1.2 2.148 Myxococcales bacterium 2026763 Bacteria Bacteria 60.8 2.64e-9   NR MCA9634375.1 2026763 g65277 i0 58.7 0.770949720670391 46 19 77.1 0 40 177 75 120 MCA9634375.1 hypothetical protein [Myxococcales bacterium] diamond 138 60.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30781428 30781428 PRJNA846486_P_NODE_61494_length_183_cov_1.470149_g61398_i0 PRJNA846486 61494 183 1.470149 2.69037267 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 60.1 1.26e-9   NR MBM3301962.1 2026735 g61398 i0 54.2 1.72131147540984 48 22 78.7 0 39 182 52 99 MBM3301962.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 315 60.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30971161 30971161 PRJNA846486_P_NODE_84174_length_166_cov_0.888889_g84078_i0 PRJNA846486 84174 166 0.888889 1.47555574 Kofleriaceae bacterium 2212474 Bacteria Bacteria 53.1 2.65e-6   NR HVK87950.1 2212474 g84078 i0 57.1 0.759036144578313 42 18 75.9 0 38 163 204 245 HVK87950.1 hypothetical protein [Kofleriaceae bacterium] diamond 126 53.1 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31286949 31286949 PRJNA846486_P_NODE_79255_length_168_cov_0.873950_g79159_i0 PRJNA846486 79255 168 0.87395 1.468236 Kofleriaceae bacterium 2212474 Bacteria Bacteria 50.4 2.49e-5   NR MFN0246831.1 2212474 g79159 i0 55.8 0.767857142857143 43 19 76.8 0 166 38 277 319 MFN0246831.1 hypothetical protein [Kofleriaceae bacterium] diamond 129 50.4 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31286955 31286955 PRJNA846486_P_NODE_93815_length_162_cov_0.920354_g93719_i0 PRJNA846486 93815 162 0.920354 1.49097348 Myxococcales bacterium 2026763 Bacteria Bacteria 72.4 4.2e-13   NR MBL9008291.1 2026763 g93719 i0 71.2 0.962962962962963 52 15 96.3 0 157 2 156 207 MBL9008291.1 hypothetical protein [Myxococcales bacterium] diamond 156 72.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31350469 31350469 PRJNA846486_P_NODE_91036_length_163_cov_0.912281_g90940_i0 PRJNA846486 91036 163 0.912281 1.48701803 Nannocystaceae bacterium 2545255 Bacteria Bacteria 42.7 0.0129   NR HWB73452.1 2545255 g90940 i0 65.4 0.975460122699387 26 9 47.9 0 79 2 4 29 HWB73452.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Nannocystaceae bacterium] diamond 159 42.7 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
31571929 31571929 PRJNA846486_P_NODE_86456_length_165_cov_0.896552_g86360_i0 PRJNA846486 86456 165 0.896552 1.4793108 Myxococcaceae bacterium 2484252 Bacteria Bacteria 44.7 0.00229   NR TAK27233.1 2484252 g86360 i0 46.3 0.981818181818182 54 23 98.2 1 163 2 132 179 TAK27233.1 MAG: hypothetical protein EPO40_16550 [Myxococcaceae bacterium] diamond 162 44.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
31643243 31643243 PRJNA846486_P_NODE_68116_length_176_cov_1.496063_g68020_i0 PRJNA846486 68116 176 1.496063 2.63307088 Bacteria 2 Bacteria Bacteria 42.7 0.0126   NR MEB2343393.1 2026735 g68020 i0 62.5 4.02272727272727 32 11 52.8 1 94 2 1 32 MEB2343393.1 riboflavin synthase [Deltaproteobacteria bacterium] diamond 708 43.1 0.990719257540603 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31864605 31864605 PRJNA846486_P_NODE_48717_length_200_cov_1.158940_g48621_i0 PRJNA846486 48717 200 1.15894 2.31788 Pseudomonadati 3379134 Bacteria Bacteria 57.4 3.24e-8   NR MBI3247806.1 2026735 g48621 i0 50 1.74 54 27 81 0 2 163 83 136 MBI3247806.1 aromatic-ring-hydroxylating dioxygenase subunit beta [Deltaproteobacteria bacterium] diamond 348 57.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32077869 32077869 PRJNA846486_P_NODE_86738_length_165_cov_0.896552_g86642_i0 PRJNA846486 86738 165 0.896552 1.4793108 Myxococcales bacterium 2026763 Bacteria Bacteria 53.1 2.8e-6   NR MCA9491922.1 2026763 g86642 i0 50 1.05454545454545 58 26 100 1 1 165 319 376 MCA9491922.1 transposase zinc-binding domain-containing protein [Myxococcales bacterium] diamond 174 53.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32181376 32181376 PRJNA846486_P_NODE_81878_length_167_cov_0.881356_g81782_i0 PRJNA846486 81878 167 0.881356 1.47186452 FCB group 1783270 Bacteria Bacteria 88.2 1.28e-18   NR MBM4361774.1 2026735 g81782 i0 78.2 34.4910179640719 55 12 98.8 0 1 165 641 695 MBM4361774.1 V-type H(+)-translocating pyrophosphatase [Deltaproteobacteria bacterium] diamond 5760 88.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32898766 32898766 PRJNA846486_P_NODE_33740_length_230_cov_1.723757_g33644_i0 PRJNA846486 33740 230 1.723757 3.9646411 Myxococcales bacterium 2026763 Bacteria Bacteria 70.9 3.76e-12   NR MDO9020555.1 2026763 g33644 i0 53.4 0.952173913043478 73 34 95.2 0 226 8 329 401 MDO9020555.1 DUF935 family protein [Myxococcales bacterium] diamond 219 70.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;