RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA846486" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA846486 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29454340 29454340 PRJNA846486_P_NODE_84090_length_166_cov_0.888889_g83994_i0 PRJNA846486 84090 166 0.888889 1.47555574 Armatimonadota bacterium 2033014 Bacteria Bacteria 58.5 3.55e-8   NR NLN76914.1 2033014 g83994 i0 68.1 0.849397590361446 47 13 84.9 1 14 154 297 341 NLN76914.1 hypothetical protein [Armatimonadota bacterium] diamond 141 58.5 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29580723 29580723 PRJNA846486_P_NODE_84170_length_166_cov_0.888889_g84074_i0 PRJNA846486 84170 166 0.888889 1.47555574 Armatimonadota bacterium 2033014 Bacteria Bacteria 39.7 0.026   NR MCC6442718.1 2033014 g84074 i0 48.5 0.596385542168675 33 17 59.6 0 141 43 17 49 MCC6442718.1 ParB N-terminal domain-containing protein [Armatimonadota bacterium] diamond 99 39.7 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29612263 29612263 PRJNA846486_P_NODE_93270_length_162_cov_0.920354_g93174_i0 PRJNA846486 93270 162 0.920354 1.49097348 Chthonomonadales bacterium 2282151 Bacteria Bacteria 92 4.64e-20   NR HSV75172.1 2282151 g93174 i0 67.9 0.981481481481482 53 17 98.1 0 3 161 7 59 HSV75172.1 hypothetical protein [Chthonomonadales bacterium] diamond 159 92 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales     Chthonomonadales bacterium
30908003 30908003 PRJNA846486_P_NODE_91134_length_163_cov_0.912281_g91038_i0 PRJNA846486 91134 163 0.912281 1.48701803 Armatimonadota bacterium 2033014 Bacteria Bacteria 95.5 1.42e-22   NR MBS1725050.1 2033014 g91038 i0 66.7 0.993865030674847 54 18 99.4 0 1 162 118 171 MBS1725050.1 site-specific DNA-methyltransferase [Armatimonadota bacterium] diamond 162 95.5 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;