RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA846486", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA846486 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
833389 833389 PRJNA846486_P_NODE_93261_length_162_cov_0.920354_g93165_i0 PRJNA846486 93261 162 0.920354 1.49097348 Campylobacter concisus 199 Bacteria Bacteria 99 1.71e-16   NTclustered gi|930358546|gb|CP012541.1| 199 g93165 i0 88.75 1.48148148148148 80 9 49 0 59 138 498074 498153 Campylobacter concisus strain ATCC 33237 chromosome, complete genome blastn 240 99 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
4661778 4661778 PRJNA846486_P_NODE_81924_length_167_cov_0.881356_g81828_i0 PRJNA846486 81924 167 0.881356 1.47186452 Sulfurospirillum sp. UCH001 1581011 Bacteria Bacteria 281 1.64e-71   NTclustered gi|757804895|dbj|AP014723.1| 1581011 g81828 i0 97.006 5.95209580838323 167 5 100 0 1 167 101757 101923 Sulfurospirillum sp. UCH001 DNA, complete genome blastn 994 281 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. UCH001
9761392 9761392 PRJNA846486_P_NODE_81988_length_167_cov_0.881356_g81892_i0 PRJNA846486 81988 167 0.881356 1.47186452 Sulfurospirillum sp. UCH001 1581011 Bacteria Bacteria 202 1.3099999999999998e-47   NTclustered gi|757804895|dbj|AP014723.1| 1581011 g81892 i0 88.554 1.98802395209581 166 19 99 0 1 166 1897369 1897534 Sulfurospirillum sp. UCH001 DNA, complete genome blastn 332 202 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. UCH001
29368455 29368455 PRJNA846486_P_NODE_71749_length_173_cov_0.967742_g71653_i0 PRJNA846486 71749 173 0.967742 1.67419366 Pseudomonadati 3379134 Bacteria Bacteria 66.6 5.34e-11   NR TXH44773.1 2482794 g71653 i0 55.4 2.94797687861272 56 25 97.1 0 169 2 265 320 TXH44773.1 MAG: PBSX family phage terminase large subunit [Desulfurellales bacterium] diamond 510 67 0.994029850746269 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
30181061 30181061 PRJNA846486_P_NODE_34512_length_228_cov_1.944134_g34416_i0 PRJNA846486 34512 228 1.944134 4.43262552 unclassified Campylobacter 2593542 Bacteria Bacteria 42.7 0.0301   NR WP_150141772.1 2593542 g34416 i0 38 0.657894736842105 50 29 63.2 1 148 5 111 160 WP_150141772.1 MULTISPECIES: capsular biosynthesis protein [unclassified Campylobacter] diamond 150 42.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter  
30244468 30244468 PRJNA846486_P_NODE_81632_length_167_cov_0.881356_g81536_i0 PRJNA846486 81632 167 0.881356 1.47186452 Desulfurellales bacterium 2482794 Bacteria Bacteria 60.8 1.12e-9   NR TXH48521.1 2482794 g81536 i0 76.1 0.826347305389222 46 11 82.6 0 2 139 66 111 TXH48521.1 MAG: hypothetical protein E6Q97_24660 [Desulfurellales bacterium] diamond 138 60.8 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
30497216 30497216 PRJNA846486_P_NODE_86013_length_165_cov_0.896552_g85917_i0 PRJNA846486 86013 165 0.896552 1.4793108 Desulfurellales bacterium 2482794 Bacteria Bacteria 41.6 0.034   NR TXH54288.1 2482794 g85917 i0 66.7 0.490909090909091 27 9 49.1 0 1 81 287 313 TXH54288.1 MAG: hypothetical protein E6Q97_11340 [Desulfurellales bacterium] diamond 81 41.6 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
31982895 31982895 PRJNA846486_P_NODE_88418_length_164_cov_0.904348_g88322_i0 PRJNA846486 88418 164 0.904348 1.48313072 Desulfurellales bacterium 2482794 Bacteria Bacteria 66.2 6.49e-11   NR TXH47398.1 2482794 g88322 i0 70.8 0.878048780487805 48 12 87.8 1 1 144 665 710 TXH47398.1 MAG: hypothetical protein E6Q97_27260 [Desulfurellales bacterium] diamond 144 66.2 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;