RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA846486" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA846486 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2108742 2108742 PRJNA846486_P_NODE_63222_length_181_cov_1.575758_g63126_i0 PRJNA846486 63222 181 1.575758 2.85212198 Leptotrichia hofstadii 157688 Bacteria Bacteria 335 1.36e-87   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g63126 i0 100 13.9502762430939 181 0 100 0 1 181 1010912 1011092 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 2525 335 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
2108769 2108769 PRJNA846486_P_NODE_76462_length_169_cov_0.866667_g76366_i0 PRJNA846486 76462 169 0.866667 1.46466723 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 279 5.95e-71   NTclustered gi|922689899|gb|CP012410.1| 712357 g76366 i0 96.45 1 169 6 100 0 1 169 120111 119943 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 169 279 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
2108793 2108793 PRJNA846486_P_NODE_83642_length_166_cov_0.888889_g83546_i0 PRJNA846486 83642 166 0.888889 1.47555574 Sneathia sanguinegens 40543 Bacteria Bacteria 307 2.69e-79   NTclustered gi|2769805188|gb|CP160095.1| 40543 g83546 i0 100 1.16867469879518 166 0 100 0 1 166 1275879 1276044 Sneathia sanguinegens strain CCUG 41628T chromosome, complete genome blastn 194 307 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia sanguinegens
21235461 21235461 PRJNA846486_P_NODE_93957_length_162_cov_0.920354_g93861_i0 PRJNA846486 93957 162 0.920354 1.49097348 Sneathia sanguinegens 40543 Bacteria Bacteria 78.7 2.22e-10   NTclustered gi|2769805188|gb|CP160095.1| 40543 g93861 i0 100 0.259259259259259 42 0 26 0 1 42 419858 419899 Sneathia sanguinegens strain CCUG 41628T chromosome, complete genome blastn 42 78.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia sanguinegens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;