RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA846486", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA846486 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7211366 7211366 PRJNA846486_P_NODE_27706_length_249_cov_2.160000_g27610_i0 PRJNA846486 27706 249 2.16 5.3784 Mycoplasma sp. Mirounga ES2805-ORL 754514 Bacteria Bacteria 54.7 0.006   NTclustered gi|1995532704|gb|CP070947.1| 754514 g27610 i0 96.97 0.132530120481928 33 0 13 1 83 114 380299 380267 Mycoplasma sp. Mirounga ES2805-ORL chromosome blastn 33 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. Mirounga ES2805-ORL
28949781 28949781 PRJNA846486_P_NODE_68048_length_176_cov_1.629921_g67952_i0 PRJNA846486 68048 176 1.629921 2.86866096 Haloplasmataceae bacterium 2862752 Bacteria Bacteria 90.5 2.25e-19   NR HEY8364444.1 2862752 g67952 i0 67.2 1.97727272727273 58 19 98.9 0 174 1 430 487 HEY8364444.1 hypothetical protein [Haloplasmataceae bacterium] diamond 348 90.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Haloplasmatales Haloplasmataceae   Haloplasmataceae bacterium
28981327 28981327 PRJNA846486_P_NODE_41908_length_212_cov_0.865031_g41812_i0 PRJNA846486 41908 212 0.865031 1.83386572 Mycoplasmopsis arginini 2094 Bacteria Bacteria 87 9.96e-20   NR WP_282457363.1 2094 g41812 i0 100 0.636792452830189 45 0 63.7 0 212 78 105 149 WP_282457363.1 P22 phage major capsid protein family protein, partial [Mycoplasmopsis arginini] diamond 135 87 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;