RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA846486" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA846486 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1231403 1231403 PRJNA846486_P_NODE_20241_length_284_cov_3.021277_g20145_i0 PRJNA846486 20241 284 3.021277 8.58042668 Bacteria 2 Bacteria Bacteria 93.5 1.54e-14   NTclustered gi|29372913|gb|AY226243.1| 34034 g20145 i0 81.197 29.2394366197183 117 21 41 1 57 173 244 359 Uncultured delta proteobacterium clone BBBB-33 16S ribosomal RNA gene, partial sequence blastn 8304 93.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
30402774 30402774 PRJNA846486_P_NODE_91213_length_163_cov_0.912281_g91117_i0 PRJNA846486 91213 163 0.912281 1.48701803 SAR324 cluster bacterium 2024889 Bacteria Bacteria 40.8 0.0393   NR MBF0279307.1 2024889 g91117 i0 41.7 0.883435582822086 48 25 88.3 2 146 3 3 47 MBF0279307.1 ribonuclease HI [SAR324 cluster bacterium] diamond 144 40.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;