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contig_metadata

11 rows where bioproject = "PRJNA846486" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA846486 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2108696 2108696 PRJNA846486_P_NODE_40722_length_214_cov_1.260606_g40626_i0 PRJNA846486 40722 214 1.260606 2.69769684 [Myrmecia] bisecta 41462 Plants Plants 105 2.12e-26   NR KAK9811451.1 41462 g40626 i0 76.1 1.86448598130841 67 16 93.9 0 2 202 138 204 KAK9811451.1 hypothetical protein WJX72_004104 [[Myrmecia] bisecta] diamond 399 105 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
3384095 3384095 PRJNA846486_P_NODE_74623_length_170_cov_1.388430_g74527_i0 PRJNA846486 74623 170 1.38843 2.360331 Tetradesmus obliquus 3088 Plants Plants 309 7.64e-80   NTclustered gi|1240946771|gb|KX756229.1| 3088 g74527 i0 99.412 21.0117647058824 170 1 100 0 1 170 80269 80100 Tetradesmus obliquus chloroplast, complete genome blastn 3572 309 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
8486202 8486202 PRJNA846486_P_NODE_96827_length_151_cov_28.754902_g96731_i0 PRJNA846486 96827 151 28.754902 43.41990202 Microglena monadina 47904 Plants Plants 52.8 0.012   NTclustered gi|952953016|gb|KT624790.1| 47904 g96731 i0 100 0.185430463576159 28 0 19 0 63 90 1738 1711 Microglena monadina clone contig-59 chloroplast, partial genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Microglena Microglena monadina
17411492 17411492 PRJNA846486_P_NODE_70434_length_174_cov_1.248000_g70338_i0 PRJNA846486 70434 174 1.248 2.17152 Chlamydomonas reinhardtii 3055 Plants Plants 126 8.5e-25   NTclustered gi|2082265001|ref|XM_001689780.2| 3055 g70338 i0 86.726 0.649425287356322 113 15 65 0 50 162 368 480 Chlamydomonas reinhardtii ribosomal protein L35 (CHLRE_14g617900v5), mRNA blastn 113 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17808961 17808961 PRJNA846486_P_NODE_62774_length_182_cov_1.075188_g62678_i0 PRJNA846486 62774 182 1.075188 1.95684216 Eukaryota 2759 Plants Plants 292 8.38e-75   NTclustered gi|1714003650|gb|MN243923.1| 3079 g62678 i0 99.379 103.368131868132 161 1 100 0 22 182 58 218 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 18813 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
21235400 21235400 PRJNA846486_P_NODE_75937_length_169_cov_1.300000_g75841_i0 PRJNA846486 75937 169 1.3 2.197 Jenufa minuta 993092 Plants Plants 291 2.75e-74   NTclustered gi|959124355|ref|NC_028582.1| 993092 g75841 i0 97.633 1 169 4 100 0 1 169 159152 158984 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 169 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
24182990 24182990 PRJNA846486_P_NODE_10279_length_386_cov_1.323442_g10184_i0 PRJNA846486 10279 386 1.323442 5.10848612 Bryopsis 3128 Plants Plants 409 1.9e-109   NTclustered gi|969822372|gb|KT950953.1| 3129 g10184 i0 85.751 99.6450777202073 386 55 100 0 1 386 194 579 Bryopsis maxima actin gene, partial cds blastn 38463 409 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis maxima
30568398 30568398 PRJNA846486_P_NODE_88653_length_164_cov_0.904348_g88557_i0 PRJNA846486 88653 164 0.904348 1.48313072 root 1 Root_unresolved Root_unresolved 67 3.49e-11   NR WIA33345.1 3088 g88557 i0 60 11.1951219512195 45 18 82.3 0 163 29 1616 1660 WIA33345.1 hypothetical protein OEZ86_006482 [Tetradesmus obliquus] diamond 1836 67.4 0.99406528189911 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
31919715 31919715 PRJNA846486_P_NODE_45917_length_204_cov_1.677419_g45821_i0 PRJNA846486 45917 204 1.677419 3.42193476 Astrephomene gubernaculifera 47775 Plants Plants 42 0.0427   NR GFR50714.1 47775 g45821 i0 46.2 0.764705882352941 52 23 72.1 3 170 24 203 252 GFR50714.1 hypothetical protein Agub_g12971 [Astrephomene gubernaculifera] diamond 156 42 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Astrephomenaceae Astrephomene Astrephomene gubernaculifera
32457750 32457750 PRJNA846486_P_NODE_42639_length_210_cov_1.614907_g42543_i0 PRJNA846486 42639 210 1.614907 3.3913047 Chlamydomonas incerta 51695 Plants Plants 92 1.03e-21   NR KAG2442829.1 51695 g42543 i0 58.6 3 70 29 100 0 1 210 12 81 KAG2442829.1 hypothetical protein HXX76_002908 [Chlamydomonas incerta] diamond 630 92 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
32835860 32835860 PRJNA846486_P_NODE_81700_length_167_cov_0.881356_g81604_i0 PRJNA846486 81700 167 0.881356 1.47186452 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 47.8 2.2e-4   NR KAF6262770.1 2650976 g81604 i0 65.9 0.736526946107784 41 14 73.7 0 6 128 64 104 KAF6262770.1 hypothetical protein COO60DRAFT_571601 [Scenedesmus sp. NREL 46B-D3] diamond 123 47.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;