RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA846486", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA846486 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5936377 5936377 PRJNA846486_P_NODE_10505_length_382_cov_2.189189_g10410_i0 PRJNA846486 10505 382 2.189189 8.36270198 Besnoitia besnoiti 94643 SAR_Eukaryotes SAR_Eukaryotes 73.1 2.8e-8   NTclustered gi|1673122112|ref|XM_029366897.1| 94643 g10410 i0 89.474 0.390052356020942 57 6 15 0 187 243 357 301 Besnoitia besnoiti ribosomal protein RPP1 (BESB_085470), partial mRNA blastn 149 73.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
16135932 16135932 PRJNA846486_P_NODE_38573_length_218_cov_2.917160_g38477_i0 PRJNA846486 38573 218 2.91716 6.3594088 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 191 3.91e-44   NTclustered gi|1931715902|ref|XM_008625783.2| 54757 g38477 i0 82.727 80.1697247706422 220 32 99 5 2 218 417 201 Plasmodium vinckei vinckei 60S ribosomal protein L10, putative (PVVCY_1003380), partial mRNA blastn 17477 191 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
29865196 29865196 PRJNA846486_P_NODE_89771_length_163_cov_1.807018_g89675_i0 PRJNA846486 89771 163 1.807018 2.94543934 Theileria orientalis strain Shintoku 869250 SAR_Eukaryotes SAR_Eukaryotes 47.4 2.97e-4   NR XP_009692337.1 869250 g89675 i0 51.3 2.87116564417178 39 19 71.8 0 162 46 239 277 XP_009692337.1 bifunctional dihydrofolate reductase/thymidilate synthase [Theileria orientalis strain Shintoku] diamond 468 47.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;