RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA846486", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 8 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJNA846486 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
833252 833252 PRJNA846486_P_NODE_29881_length_241_cov_11.135417_g29785_i0 PRJNA846486 29881 241 11.135417 26.83635497 uncultured Chlamydiales bacterium 174324 Bacteria Bacteria 217 7.269999999999999e-52   NTclustered gi|2874253688|emb|OY969414.1| 174324 g29785 i0 83.128 432.394190871369 243 35 100 6 1 241 2364133 2364371 MAG: uncultured Chlamydiales bacterium isolate MFD04463.bin.c.14 genome assembly, chromosome: 1 blastn 104207 217 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
26769934 26769934 PRJNA846486_P_NODE_82001_length_167_cov_0.881356_g81905_i0 PRJNA846486 82001 167 0.881356 1.47186452 Chlamydiota bacterium 2081524 Bacteria Bacteria 89 3.43e-19   NR MCH9631770.1 2081524 g81905 i0 80 0.988023952095808 55 11 98.8 0 165 1 241 295 MCH9631770.1 Beta sliding clamp [Chlamydiota bacterium] diamond 165 89 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28191547 28191547 PRJNA846486_P_NODE_73746_length_171_cov_1.262295_g73650_i0 PRJNA846486 73746 171 1.262295 2.15852445 Chlamydiota bacterium 2081524 Bacteria Bacteria 85.9 5.16e-19   NR MCH9632737.1 2081524 g73650 i0 75 0.982456140350877 56 13 98.2 1 2 169 59 113 MCH9632737.1 30S ribosomal protein S4 [Chlamydiota bacterium] diamond 168 85.9 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28223185 28223185 PRJNA846486_P_NODE_91306_length_163_cov_0.912281_g91210_i0 PRJNA846486 91306 163 0.912281 1.48701803 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 50.1 1.45e-5   NR HRD54987.1 2052176 g91210 i0 60 1.63803680981595 45 17 82.8 1 137 3 56 99 HRD54987.1 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [Parachlamydiaceae bacterium] diamond 267 50.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29486064 29486064 PRJNA846486_P_NODE_51950_length_195_cov_1.424658_g51854_i0 PRJNA846486 51950 195 1.424658 2.7780831 Chlamydiota bacterium 2081524 Bacteria Bacteria 112 1.91e-29   NR MCH9633208.1 2081524 g51854 i0 75.4 1 65 16 100 0 1 195 26 90 MCH9633208.1 hypothetical protein [Chlamydiota bacterium] diamond 195 112 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
29675407 29675407 PRJNA846486_P_NODE_61570_length_183_cov_1.350746_g61474_i0 PRJNA846486 61570 183 1.350746 2.47186518 Chlamydiota bacterium 2081524 Bacteria Bacteria 108 3.61e-26   NR MCH9631757.1 2081524 g61474 i0 85 0.983606557377049 60 9 98.4 0 3 182 131 190 MCH9631757.1 Exodeoxyribonuclease 7 large subunit [Chlamydiota bacterium] diamond 180 108 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30023369 30023369 PRJNA846486_P_NODE_86291_length_165_cov_0.896552_g86195_i0 PRJNA846486 86291 165 0.896552 1.4793108 Chlamydiota bacterium 2081524 Bacteria Bacteria 60.5 2.72e-9   NR MCH9632931.1 2081524 g86195 i0 68.4 0.690909090909091 38 12 69.1 0 163 50 165 202 MCH9632931.1 putative GTP-binding protein EngB [Chlamydiota bacterium] diamond 114 60.5 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30371174 30371174 PRJNA846486_P_NODE_63232_length_181_cov_1.575758_g63136_i0 PRJNA846486 63232 181 1.575758 2.85212198 Chlamydiota bacterium 2081524 Bacteria Bacteria 48.9 1.06e-4   NR MCH9632680.1 2081524 g63136 i0 66.7 0.546961325966851 33 11 54.7 0 104 6 1 33 MCH9632680.1 hypothetical protein [Chlamydiota bacterium] diamond 99 48.9 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;