RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA846486", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA846486 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27094778 27094778 PRJNA846486_P_NODE_2342_length_733_cov_3.995614_g2269_i0 PRJNA846486 2342 733 3.9956140000000002 29.28785062 root 1 Root_unresolved Root_unresolved 79.7 4.14e-15   NR WP_112149389.1 2317 g2269 i0 39.5 0.994542974079127 81 49 33.2 0 524 282 6 86 WP_112149389.1 hypothetical protein [Methanosphaera stadtmanae] diamond 729 80.5 0.990062111801242 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
27789851 27789851 PRJNA846486_P_NODE_26344_length_255_cov_1.009709_g26248_i0 PRJNA846486 26344 255 1.009709 2.57475795 root 1 Root_unresolved Root_unresolved 48.5 3.92e-4   NR MBO7735052.1 66852 g26248 i0 83.3 1.61176470588235 24 4 28.2 0 127 198 365 388 MBO7735052.1 DNA (cytosine-5-)-methyltransferase [Methanobrevibacter sp.] diamond 411 48.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30276240 30276240 PRJNA846486_P_NODE_85032_length_165_cov_1.534483_g84936_i0 PRJNA846486 85032 165 1.534483 2.53189695 Methanobacterium sp. 2164 Archaea Archaea 67.4 2.37e-11   NR MEN6551468.1 2164 g84936 i0 59.2 0.890909090909091 49 20 89.1 0 19 165 286 334 MEN6551468.1 BspA family leucine-rich repeat surface protein [Methanobacterium sp.] diamond 147 67.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;