RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA846486", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA846486 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26801507 26801507 PRJNA846486_P_NODE_78881_length_168_cov_0.873950_g78785_i0 PRJNA846486 78881 168 0.87395 1.468236 Fibrobacterota bacterium 2052160 Bacteria Bacteria 73.6 1.78e-13   NR MBK9580263.1 2052160 g78785 i0 89.7 0.696428571428571 39 4 69.6 0 3 119 275 313 MBK9580263.1 hypothetical protein [Fibrobacterota bacterium] diamond 117 73.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
28223180 28223180 PRJNA846486_P_NODE_79206_length_168_cov_0.873950_g79110_i0 PRJNA846486 79206 168 0.87395 1.468236 Fibrobacterota bacterium 2052160 Bacteria Bacteria 61.2 1.23e-9   NR MBK9580262.1 2052160 g79110 i0 82.1 0.696428571428571 39 7 69.6 0 119 3 1 39 MBK9580262.1 hypothetical protein [Fibrobacterota bacterium] diamond 117 61.2 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;