RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA846110" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846110 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28634039 28634039 PRJNA846110_P_NODE_21287_length_257_cov_0.956522_g21042_i0 PRJNA846110 21287 257 0.956522 2.45826154 Opitutales bacterium 2026772 Bacteria Bacteria 44.3 0.0119   NR HNX04777.1 2026772 g21042 i0 39.2 1.19066147859922 51 26 59.5 1 40 192 14 59 HNX04777.1 prepilin peptidase [Opitutales bacterium] diamond 306 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
29675383 29675383 PRJNA846110_P_NODE_16990_length_278_cov_1.141463_g16745_i0 PRJNA846110 16990 278 1.141463 3.17326714 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 143 2.0399999999999997e-37   NR MFO1497240.1 2026799 g16745 i0 80.4 0.992805755395683 92 18 99.3 0 1 276 54 145 MFO1497240.1 TonB-dependent receptor [Verrucomicrobiota bacterium] diamond 276 143 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29675389 29675389 PRJNA846110_P_NODE_22790_length_251_cov_0.865169_g22545_i0 PRJNA846110 22790 251 0.865169 2.17157419 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 44.7 0.00847   NR MEM1084950.1 2026799 g22545 i0 43.1 0.693227091633466 58 29 64.5 2 88 249 448 505 MEM1084950.1 LamG-like jellyroll fold domain-containing protein [Verrucomicrobiota bacterium] diamond 174 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30663456 30663456 PRJNA846110_P_NODE_24353_length_249_cov_0.875000_g24108_i0 PRJNA846110 24353 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 52.4 1.63e-5   NR WP_185659583.1 415222 g24108 i0 83.3 4.78313253012048 30 5 36.1 0 157 246 1 30 WP_185659583.1 DNA polymerase/3'-5' exonuclease PolX [Pelagicoccus albus] diamond 1191 52.8 0.992424242424242 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Pelagicoccaceae Pelagicoccus Pelagicoccus albus
31540221 31540221 PRJNA846110_P_NODE_256_length_1768_cov_4.318584_g193_i0 PRJNA846110 256 1768 4.318584 76.35256512 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 45.4 0.0464   NR MEC9112036.1 2026799 g193 i0 36.5 0.0882352941176471 52 31 8.5 1 873 1022 16 67 MEC9112036.1 sugar phosphate isomerase/epimerase [Verrucomicrobiota bacterium] diamond 156 45.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32236454 32236454 PRJNA846110_P_NODE_30878_length_229_cov_2.589744_g30633_i0 PRJNA846110 30878 229 2.589744 5.93051376 Brevifollis gellanilyticus 748831 Bacteria Bacteria 97.4 1.82e-21   NR WP_170266951.1 748831 g30633 i0 73 0.96943231441048 74 20 96.9 0 7 228 5239 5312 WP_170266951.1 autotransporter-associated beta strand repeat-containing protein [Brevifollis gellanilyticus] diamond 222 97.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Brevifollis Brevifollis gellanilyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;