RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA846110" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846110 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26674569 26674569 PRJNA846110_P_NODE_5761_length_434_cov_3.337950_g5517_i0 PRJNA846110 5761 434 3.33795 14.486703 Caenorhabditis remanei 31234 Nematoda Nematoda 47 0.00858   NR XP_053579404.1 31234 g5517 i0 76.7 0.207373271889401 30 7 20.7 0 344 433 33 62 XP_053579404.1 hypothetical protein GCK72_024337 [Caenorhabditis remanei] diamond 90 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
27789848 27789848 PRJNA846110_P_NODE_9664_length_344_cov_2.273063_g9420_i0 PRJNA846110 9664 344 2.273063 7.81933672 Metazoa 33208 Nematoda Nematoda 202 2.1e-63   NR NP_001343725.1 6239 g9420 i0 97 100.203488372093 100 3 87.2 0 302 3 8 107 NP_001343725.1 Ras-related protein Rab-2 [Caenorhabditis elegans] diamond 34470 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;