RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA846110" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA846110 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7211151 7211151 PRJNA846110_P_NODE_21406_length_256_cov_1.415301_g21161_i0 PRJNA846110 21406 256 1.415301 3.62317056 Frontonia depressa 3042678 SAR_Eukaryotes SAR_Eukaryotes 250 7.69e-62   NTclustered gi|2496410947|gb|OQ869835.1| 3042678 g21161 i0 85.141 90.9296875 249 31 96 4 1 246 1549 1794 Frontonia depressa isolate S229 large subunit ribosomal RNA gene, partial sequence blastn 23278 250 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Frontoniidae Frontonia Frontonia depressa
28042361 28042361 PRJNA846110_P_NODE_28305_length_243_cov_1.435294_g28060_i0 PRJNA846110 28305 243 1.435294 3.48776442 Tetrahymenidae 291294 SAR_Eukaryotes SAR_Eukaryotes 119 3.74e-29   NR XP_004035755.1 5932 g28060 i0 69.6 4.90123456790123 79 24 97.5 0 239 3 110 188 XP_004035755.1 hypothetical protein IMG5_090680 [Ichthyophthirius multifiliis] diamond 1191 119 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
29336880 29336880 PRJNA846110_P_NODE_30329_length_241_cov_0.916667_g30084_i0 PRJNA846110 30329 241 0.916667 2.20916747 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 130 1.71e-33   NR XP_001024675.2 312017 g30084 i0 78.2 1.94190871369295 78 17 97.1 0 5 238 473 550 XP_001024675.2 aspartyl-tRNA synthetase protein [Tetrahymena thermophila SB210] diamond 468 130 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
29928548 29928548 PRJNA846110_P_NODE_15231_length_286_cov_1.483568_g14986_i0 PRJNA846110 15231 286 1.483568 4.24300448 Paramecium octaurelia 43137 SAR_Eukaryotes SAR_Eukaryotes 55.1 8.91e-7   NR CAD8166097.1 43137 g14986 i0 36.3 2.21328671328671 102 53 96.5 4 278 3 11 110 CAD8166097.1 unnamed protein product [Paramecium octaurelia] diamond 633 55.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;