RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA846110", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA846110 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11435192 11435192 PRJNA846110_P_NODE_7569_length_382_cov_1.744337_g7325_i0 PRJNA846110 7569 382 1.744337 6.66336734 Myxococcia 32015 Bacteria Bacteria 460 5.11e-125   NTclustered gi|913610804|gb|CP012333.1| 1391654 g7325 i0 88.372 111.539267015707 387 39 100 5 1 382 3942386 3942001 Labilithrix luteola strain DSM 27648, complete genome blastn 42608 462 0.995670995670996 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
12312096 12312096 PRJNA846110_P_NODE_14110_length_292_cov_1.744292_g13865_i0 PRJNA846110 14110 292 1.744292 5.09333264 Nannocystis pusilla 889268 Bacteria Bacteria 473 4.8699999999999987e-129   NTclustered gi|1386873113|gb|MF774780.1| 889268 g13865 i0 95.89 129.83904109589 292 12 100 0 1 292 58 349 Nannocystis pusilla strain Na p29 23S ribosomal RNA gene, partial sequence blastn 37913 473 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis pusilla
27244368 27244368 PRJNA846110_P_NODE_20043_length_263_cov_1.268421_g19798_i0 PRJNA846110 20043 263 1.268421 3.33594723 Corallococcus sp. bb12-1 2996784 Bacteria Bacteria 127 1.64e-32   NR WP_267577937.1 2996784 g19798 i0 64.8 4.15209125475285 91 28 99.2 1 3 263 54 144 WP_267577937.1 DUF1552 domain-containing protein [Corallococcus sp. bb12-1] diamond 1092 127 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. bb12-1
32236459 32236459 PRJNA846110_P_NODE_6918_length_397_cov_2.305556_g6674_i0 PRJNA846110 6918 397 2.305556 9.15305732 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.4 0.0197   NR RLB60749.1 2026735 g6674 i0 48.9 0.340050377833753 45 23 34 0 204 338 175 219 RLB60749.1 MAG: hypothetical protein DRI90_12965, partial [Deltaproteobacteria bacterium] diamond 135 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;