RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA846110", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA846110 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7211135 7211135 PRJNA846110_P_NODE_20206_length_262_cov_1.550265_g19961_i0 PRJNA846110 20206 262 1.550265 4.0616943 Campylobacter concisus 199 Bacteria Bacteria 353 5.85e-93   NTclustered gi|1938724023|gb|CP060707.1| 199 g19961 i0 91.188 11.530534351145 261 22 99 1 3 262 1842296 1842036 Campylobacter concisus strain P1CDO2 chromosome, complete genome blastn 3021 353 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
23785372 23785372 PRJNA846110_P_NODE_24739_length_248_cov_0.880000_g24494_i0 PRJNA846110 24739 248 0.88 2.1824 Campylobacter showae 204 Bacteria Bacteria 235 2.08e-57   NTclustered gi|1483583555|emb|LT631479.1| 204 g24494 i0 86.175 2.625 217 30 88 0 1 217 1755632 1755416 Campylobacter showae strain B91_TPP genome assembly, chromosome: I blastn 651 235 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
31856323 31856323 PRJNA846110_P_NODE_16937_length_278_cov_1.370732_g16692_i0 PRJNA846110 16937 278 1.370732 3.81063496 Helicobacter pylori 210 Bacteria Bacteria 57.8 1.27e-7   NR GAA9038225.1 210 g16692 i0 81.8 1.06834532374101 33 6 35.6 0 221 123 3 35 GAA9038225.1 hypothetical protein Kyoto184A_01080 [Helicobacter pylori] diamond 297 57.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;