RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA846110", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA846110 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29076004 29076004 PRJNA846110_P_NODE_6008_length_426_cov_1.036827_g5764_i0 PRJNA846110 6008 426 1.036827 4.41688302 Rhizoclosmatium globosum 329046 Fungi Fungi 47.8 0.00365   NR ORY50952.1 329046 g5764 i0 43.2 0.570422535211268 81 38 53.5 2 293 66 197 274 ORY50952.1 hypothetical protein BCR33DRAFT_498941 [Rhizoclosmatium globosum] diamond 243 47.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rhizoclosmatium Rhizoclosmatium globosum
31160201 31160201 PRJNA846110_P_NODE_2675_length_636_cov_2.134991_g2441_i0 PRJNA846110 2675 636 2.134991 13.57854276 Hyaloraphidium curvatum 82268 Fungi Fungi 44.7 0.0251   NR KAI9002827.1 82268 g2441 i0 38.6 0.268867924528302 57 35 26.9 0 130 300 37 93 KAI9002827.1 hypothetical protein DFJ74DRAFT_695070 [Hyaloraphidium curvatum] diamond 171 44.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;