RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA846110", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA846110 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29517778 29517778 PRJNA846110_P_NODE_30830_length_230_cov_2.732484_g30585_i0 PRJNA846110 30830 230 2.732484 6.2847132 Longimicrobium sp. 2029185 Bacteria Bacteria 144 6.51e-42   NR HYW12902.1 2029185 g30585 i0 93.4 0.991304347826087 76 5 99.1 0 3 230 34 109 HYW12902.1 GNAT family N-acetyltransferase [Longimicrobium sp.] diamond 228 144 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29706874 29706874 PRJNA846110_P_NODE_17910_length_273_cov_2.030000_g17665_i0 PRJNA846110 17910 273 2.03 5.5419 Longimicrobium sp. 2029185 Bacteria Bacteria 77.8 2.11e-14   NR HEX8363439.1 2029185 g17665 i0 50 1.9010989010989 90 28 80.2 2 3 221 324 413 HEX8363439.1 putative DNA modification/repair radical SAM protein [Longimicrobium sp.] diamond 519 77.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31382067 31382067 PRJNA846110_P_NODE_17056_length_277_cov_2.166667_g16811_i0 PRJNA846110 17056 277 2.166667 6.00166759 Longimicrobium sp. 2029185 Bacteria Bacteria 63.9 1.99e-9   NR HET7234345.1 2029185 g16811 i0 48.6 0.779783393501805 72 32 75.8 2 276 67 384 452 HET7234345.1 Ig-like domain-containing protein [Longimicrobium sp.] diamond 216 63.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;