RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA846110" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA846110 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8884468 8884468 PRJNA846110_P_NODE_9547_length_346_cov_1.128205_g9303_i0 PRJNA846110 9547 346 1.128205 3.9035893 Leishmania 5658 Euglenozoa other_Eukaryota 132 4.09e-26   NTclustered gi|440222381|gb|JX030049.1| 5659 g9303 i0 88.991 22.3034682080925 109 8 49 3 1 107 440 334 Leishmania amazonensis isolate LaPH8.rRNA.25 28S ribosomal RNA (LSU-beta), partial sequence blastn 7717 132 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
16135725 16135725 PRJNA846110_P_NODE_20433_length_261_cov_1.367021_g20188_i0 PRJNA846110 20433 261 1.367021 3.56792481 Trypanosoma minasense 83893 Euglenozoa other_Eukaryota 132 2.97e-26   NTclustered gi|159157536|dbj|AB362411.1| 83893 g20188 i0 90.291 26.1264367816092 103 6 38 4 1 100 6300 6401 Trypanosoma minasense genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 6819 132 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma minasense
17411290 17411290 PRJNA846110_P_NODE_27134_length_245_cov_0.895349_g26889_i0 PRJNA846110 27134 245 0.895349 2.19360505 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 54.7 0.006   NTclustered gi|1624745757|ref|XM_029023807.1| 67003 g26889 i0 100 0.118367346938776 29 0 12 0 27 55 1794 1766 Trypanosoma theileri vacuolar assembly protein vps41 (TM35_000073610), partial mRNA blastn 29 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
24182949 24182949 PRJNA846110_P_NODE_31099_length_209_cov_5.580882_g30854_i0 PRJNA846110 31099 209 5.580882 11.66404338 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.1 3.04e-5   NTclustered gi|2031946985|emb|OD958550.1| 5763 g30854 i0 100 15.5167464114833 33 0 16 0 76 108 4325 4357 Naegleria fowleri Karachi_NF001 strain blastn 3243 62.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;