RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA846086" and tax_phylum = "Deinococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA846086 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2108308 2108308 PRJNA846086_P_NODE_2502_length_265_cov_1.604167_g2436_i0 PRJNA846086 2502 265 1.604167 4.25104255 Deinococcus 1298 Bacteria Bacteria 152 2.8999999999999996e-42   NR WP_189642579.1 394230 g2436 i0 87.5 2.98867924528302 88 11 99.6 0 2 265 124 211 WP_189642579.1 aspartate--tRNA(Asn) ligase [Deinococcus piscis] diamond 792 152 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus piscis
12311983 12311983 PRJNA846086_P_NODE_1010_length_366_cov_1.576792_g944_i0 PRJNA846086 1010 366 1.576792 5.77105872 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 671 0   NTclustered gi|821341785|gb|CP011389.1| 1309411 g944 i0 99.727 213.18306010929 366 1 100 0 1 366 1637230 1637595 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 78025 671 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
13586520 13586520 PRJNA846086_P_NODE_4231_length_246_cov_0.890173_g4165_i0 PRJNA846086 4231 246 0.890173 2.18982558 Deinococcus aquaticus 328692 Bacteria Bacteria 283 7.239999999999999e-72   NTclustered gi|2444120906|gb|CP115165.1| 328692 g4165 i0 87.449 2.1260162601626 247 29 100 2 1 246 2676319 2676564 Deinococcus aquaticus strain PB-314 chromosome, complete genome blastn 523 283 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aquaticus
14860758 14860758 PRJNA846086_P_NODE_2792_length_258_cov_1.351351_g2726_i0 PRJNA846086 2792 258 1.351351 3.48648558 Deinococcus sp. VB343 3385567 Bacteria Bacteria 477 3.2699999999999985e-130   NTclustered gi|2905211496|gb|CP179945.1| 3385567 g2726 i0 100 2 258 0 100 0 1 258 399432 399175 Deinococcus sp. VB343 chromosome 1, complete sequence blastn 516 477 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB343
20357549 20357549 PRJNA846086_P_NODE_1816_length_287_cov_1.598131_g1750_i0 PRJNA846086 1816 287 1.598131 4.58663597 Deinococcus 1298 Bacteria Bacteria 520 6.049999999999999e-143   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g1750 i0 99.303 182.344947735192 287 2 100 0 1 287 74285 74571 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 52333 525 0.990476190476191 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
24182823 24182823 PRJNA846086_P_NODE_4459_length_245_cov_0.895349_g4393_i0 PRJNA846086 4459 245 0.895349 2.19360505 Deinococcus 1298 Bacteria Bacteria 174 4.52e-39   NTclustered gi|2706840606|gb|CP149783.1| 3112952 g4393 i0 79.592 10.8571428571429 245 48 99 2 2 245 335379 335136 Deinococcus sp. VB142 chromosome 2, complete sequence blastn 2660 174 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
24182829 24182829 PRJNA846086_P_NODE_5159_length_243_cov_0.870588_g5093_i0 PRJNA846086 5159 243 0.870588 2.11552884 Deinococcus 1298 Bacteria Bacteria 316 7.03e-82   NTclustered gi|2890653062|gb|CP177252.1| 367282 g5093 i0 90.535 210.59670781893 243 17 99 6 1 238 2671897 2672138 Deinococcus yunweiensis strain KCTC 3955 chromosome, complete genome blastn 51175 316 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yunweiensis
27316231 27316231 PRJNA846086_P_NODE_5403_length_242_cov_0.911243_g5337_i0 PRJNA846086 5403 242 0.911243 2.20520806 Meiothermus 65551 Bacteria Bacteria 120 3.18e-32   NR MDQ3397725.1 1913990 g5337 i0 68.8 2.00826446280992 80 22 99.2 1 2 241 32 108 MDQ3397725.1 Uma2 family endonuclease [Deinococcota bacterium] diamond 486 120 1 Bacteria   Thermotogati Deinococcota         Deinococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;