RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA846086", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA846086 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29620541 29620541 PRJNA846086_P_NODE_4830_length_244_cov_0.900585_g4764_i0 PRJNA846086 4830 244 0.900585 2.1974274 Pseudomonadati 3379134 Bacteria Bacteria 113 1.89e-29   NR MBI5442945.1 2026735 g4764 i0 63.9 11.7540983606557 83 27 98.4 1 4 243 13 95 MBI5442945.1 peroxiredoxin [Deltaproteobacteria bacterium] diamond 2868 114 0.991228070175439 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31002691 31002691 PRJNA846086_P_NODE_3594_length_249_cov_0.875000_g3528_i0 PRJNA846086 3594 249 0.875 2.17875 Polyangia bacterium 3058050 Bacteria Bacteria 45.4 0.00395   NR HEX7501070.1 3058050 g3528 i0 53.8 0.469879518072289 39 18 47 0 115 231 134 172 HEX7501070.1 WxcM-like domain-containing protein [Polyangia bacterium] diamond 117 45.4 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;