RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA846086" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA846086 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28421410 28421410 PRJNA846086_P_NODE_1566_length_302_cov_1.960699_g1500_i0 PRJNA846086 1566 302 1.960699 5.92131098 Gammaretrovirus 153135 Viruses Viruses 194 6.749999999999999e-55   NR NP_057933.2 11801 g1500 i0 97 13.9072847682119 100 3 99.3 0 2 301 1168 1267 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 4200 194 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30442427 30442427 PRJNA846086_P_NODE_1413_length_317_cov_1.413934_g1347_i0 PRJNA846086 1413 317 1.413934 4.48217078 Gammaretrovirus 153135 Viruses Viruses 220 4.22e-64   NR ARB03489.1 11786 g1347 i0 99 10.9305993690852 105 1 99.4 0 1 315 807 911 ARB03489.1 putative gag-pro-pol polyprotein [Murine leukemia virus] diamond 3465 222 0.990990990990991 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;