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contig_metadata

17 rows where bioproject = "PRJNA841653" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA841653 · 17 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
831038 831038 PRJNA841653_P_NODE_6521_length_666_cov_700.158516_g5883_i0 PRJNA841653 6521 666 700.158516 4663.05571656 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1206 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g5883 i0 99.697 46.7417417417417 659 2 99 0 1 659 2898 2240 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 31130 1206 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3782577 3782577 PRJNA841653_P_NODE_28783_length_303_cov_862.939130_g28109_i0 PRJNA841653 28783 303 862.93913 2614.7055639 Vermamoeba 1260114 Tubulinea other_Eukaryota 497 3.0199999999999993e-136   NTclustered gi|2806326577|gb|PQ345827.1| 5778 g28109 i0 100 88.7788778877888 269 0 89 0 35 303 117 385 Vermamoeba vermiformis isolate 8FSa small subunit ribosomal RNA gene, partial sequence blastn 26900 497 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5933246 5933246 PRJNA841653_P_NODE_14485_length_432_cov_2.598886_g13814_i0 PRJNA841653 14485 432 2.598886 11.22718752 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 483 1.2499999999999999e-131   NTclustered gi|909719645|gb|KT185625.1| 5778 g13814 i0 87.067 10.525462962963 433 48 99 8 1 430 1042 615 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 4547 483 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7208706 7208706 PRJNA841653_P_NODE_34706_length_278_cov_710.375610_g34032_i0 PRJNA841653 34706 278 710.37561 1974.8441958 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 486 5.919999999999998e-133   NTclustered gi|300078496|gb|GU001158.1| 5778 g34032 i0 99.257 44.9640287769784 269 2 97 0 10 278 3405 3673 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12500 486 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8482852 8482852 PRJNA841653_P_NODE_12267_length_473_cov_2.922500_g11596_i0 PRJNA841653 12267 473 2.9225 13.823425 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 719 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g11596 i0 94.492 68.3150105708245 472 17 98 7 9 473 19979 20448 Hartmannella vermiformis mitochondrion, complete genome blastn 32313 719 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8883929 8883929 PRJNA841653_P_NODE_49767_length_247_cov_11.333333_g49093_i0 PRJNA841653 49767 247 11.333333 27.99333251 Vermamoeba 1260114 Tubulinea other_Eukaryota 87.9 6.12e-13   NTclustered gi|909719645|gb|KT185625.1| 5778 g49093 i0 91.935 18.0971659919028 62 5 25 0 6 67 5548 5609 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 4470 87.9 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9758986 9758986 PRJNA841653_P_NODE_60448_length_242_cov_0.911243_g59774_i0 PRJNA841653 60448 242 0.911243 2.20520806 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 340 4.15e-89   NTclustered gi|909719645|gb|KT185625.1| 5778 g59774 i0 92.116 0.995867768595041 241 19 99 0 2 242 374 614 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 241 340 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11434781 11434781 PRJNA841653_P_NODE_9269_length_553_cov_7.675000_g8603_i0 PRJNA841653 9269 553 7.675 42.44275 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 872 0   NTclustered gi|54306228|gb|AY626163.1| 297386 g8603 i0 95.772 77.6491862567812 544 18 98 5 1 542 1102 562 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 42940 872 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
12710323 12710323 PRJNA841653_P_NODE_29570_length_299_cov_1306.743363_g28896_i0 PRJNA841653 29570 299 1306.743363 3907.16265537 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 529 1.0499999999999996e-145   NTclustered gi|300078496|gb|GU001158.1| 5778 g28896 i0 100 50.0100334448161 286 0 96 0 14 299 948 1233 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14953 529 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12710622 12710622 PRJNA841653_P_NODE_9370_length_549_cov_9.693277_g8704_i0 PRJNA841653 9370 549 9.693277 53.21609073 Tubulinea 555369 Tubulinea other_Eukaryota 1007 0   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g8704 i0 100 79.9872495446266 545 0 99 0 5 549 605 1149 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 43913 1007 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
16133329 16133329 PRJNA841653_P_NODE_41153_length_257_cov_1.521739_g40479_i0 PRJNA841653 41153 257 1.521739 3.91086923 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 403 5.599999999999998e-108   NTclustered gi|292559443|ref|NC_013986.1| 5778 g40479 i0 95.276 47.727626459144 254 12 99 0 1 254 27737 27484 Hartmannella vermiformis mitochondrion, complete genome blastn 12266 403 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18682287 18682287 PRJNA841653_P_NODE_60815_length_241_cov_64.404762_g60141_i0 PRJNA841653 60815 241 64.404762 155.21547642 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 387 5.24e-103   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g60141 i0 95.833 32.8215767634855 240 8 99 2 1 239 4201 3963 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7910 387 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
21232140 21232140 PRJNA841653_P_NODE_15037_length_423_cov_11.262857_g14366_i0 PRJNA841653 15037 423 11.262857 47.64188511 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 425 2.08e-114   NTclustered gi|292559443|ref|NC_013986.1| 5778 g14366 i0 85.646 1.99054373522459 418 45 97 14 1 411 26004 25595 Hartmannella vermiformis mitochondrion, complete genome blastn 842 425 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22507817 22507817 PRJNA841653_P_NODE_62898_length_239_cov_48.945783_g62224_i0 PRJNA841653 62898 239 48.945783 116.98042137 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 416 6.609999999999999e-112   NTclustered gi|300078496|gb|GU001158.1| 5778 g62224 i0 99.561 101.627615062762 228 1 95 0 1 228 2242 2015 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24289 416 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22908053 22908053 PRJNA841653_P_NODE_15618_length_415_cov_29.546784_g14946_i0 PRJNA841653 15618 415 29.546784 122.6191536 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 739 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g14946 i0 99.507 21.944578313253 406 2 98 0 1 406 1630 1225 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9107 739 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25056218 25056218 PRJNA841653_P_NODE_13480_length_449_cov_3.007979_g12809_i0 PRJNA841653 13480 449 3.007979 13.50582571 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 512 1.66e-140   NTclustered gi|909719645|gb|KT185625.1| 5778 g12809 i0 87.919 0.99554565701559 447 38 99 13 1 445 623 191 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 447 512 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25056297 25056297 PRJNA841653_P_NODE_17940_length_385_cov_84.262821_g17268_i0 PRJNA841653 17940 385 84.262821 324.41186085 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 667 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g17268 i0 98.67 44.9376623376623 376 5 98 0 10 385 6674 7049 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 17301 667 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;