RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA841653", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA841653 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5933690 5933690 PRJNA841653_P_NODE_35345_length_276_cov_1.783251_g34671_i0 PRJNA841653 35345 276 1.783251 4.92177276 Pyramidobacter piscolens 638849 Bacteria Bacteria 363 1.03e-95   NTclustered gi|167996909|gb|EU379932.1| 352165 g34671 i0 90.809 236.065217391304 272 23 99 2 1 272 3233 2964 Synergistes sp. W5455 16S ribosomal RNA gene, 16S-23S ribosomal RNA intergenic spacer, 23S ribosomal RNA gene, 23S-5S ribosomal RNA intergenic spacer, and 5S ribosomal RNA gene, complete sequence blastn 65154 363 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter piscolens
13583636 13583636 PRJNA841653_P_NODE_10451_length_518_cov_1.166292_g9784_i0 PRJNA841653 10451 518 1.166292 6.04139256 Pyramidobacter sp. YE332 3068894 Bacteria Bacteria 597 5.1999999999999986e-166   NTclustered gi|2601021520|gb|CP133038.1| 3068894 g9784 i0 87.739 75.042471042471007 522 50 99 10 5 518 1863363 1862848 Pyramidobacter sp. YE332 chromosome, complete genome blastn 38872 597 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter sp. YE332
28317999 28317999 PRJNA841653_P_NODE_54566_length_245_cov_0.895349_g53892_i0 PRJNA841653 54566 245 0.895349 2.19360505 Synergistaceae bacterium OttesenSCG-928-D05 2885227 Bacteria Bacteria 105 1.94e-25   NR MDL2298784.1 2885227 g53892 i0 59 0.955102040816327 78 32 95.5 0 11 244 147 224 MDL2298784.1 hypothetical protein [Synergistaceae bacterium OttesenSCG-928-D05] diamond 234 105 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium OttesenSCG-928-D05

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;