RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA841653", tax_kingdom = "Fungi" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 7 ✖

tax_kingdom 1

  • Fungi · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA841653 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
830229 830229 PRJNA841653_P_NODE_22221_length_345_cov_4.272059_g21547_i0 PRJNA841653 22221 345 4.272059 14.73860355 Microsporidium sp. 1844323 Fungi Fungi 422 2.16e-113   NTclustered gi|1696295901|gb|MN121384.1| 1844323 g21547 i0 89.118 27.2724637681159 340 36 98 1 5 343 124 463 Microsporidium sp. isolate 12AR small subunit ribosomal RNA gene, partial sequence blastn 9409 422 1 Eukaryota Opisthokonta Fungi Microsporidia       Microsporidium Microsporidium sp.
5058561 5058561 PRJNA841653_P_NODE_2004_length_1317_cov_52.907556_g1630_i0 PRJNA841653 2004 1317 52.907556 696.79251252 Fungi 4751 Fungi Fungi 183 4.58e-41   NTclustered gi|1378896647|gb|MF278562.1| 1485682 g1630 i0 95.652 11.5907365223994 115 4 9 1 1045 1159 5537 5650 Mitosporidium daphniae strain UGP3 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15265 183 1 Eukaryota Opisthokonta Fungi Microsporidia       Mitosporidium Mitosporidium daphniae
14858711 14858711 PRJNA841653_P_NODE_4932_length_772_cov_5.052933_g4329_i0 PRJNA841653 4932 772 5.052933 39.00864276 Vittaforma corneae 42399 Fungi Fungi 122 5.81e-23   NTclustered gi|667639983|ref|XR_552275.1| 993615 g4329 i0 78.818 1.24222797927461 203 28 25 12 573 765 849 652 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 959 122 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
23783235 23783235 PRJNA841653_P_NODE_58939_length_242_cov_6.532544_g58265_i0 PRJNA841653 58939 242 6.532544 15.80875648 uncultured Microsporidia 546760 Fungi Fungi 339 1.49e-88   NTclustered gi|2054360377|gb|MZ405778.1| 546760 g58265 i0 92.766 54.5330578512397 235 16 97 1 1 234 236 2 Uncultured Microsporidia clone OTU_10237 small subunit ribosomal RNA gene, partial sequence blastn 13197 339 1 Eukaryota Opisthokonta Fungi Microsporidia         uncultured Microsporidia
30149282 30149282 PRJNA841653_P_NODE_20252_length_362_cov_4.373702_g19578_i0 PRJNA841653 20252 362 4.373702 15.83280124 Pancytospora epiphaga 1938578 Fungi Fungi 65.1 2.03e-9   NR KAI5177932.1 1938578 g19578 i0 64 0.414364640883978 50 18 41.4 0 209 60 9 58 KAI5177932.1 hypothetical protein PAEPH01_2511, partial [Pancytospora epiphaga] diamond 150 65.1 1 Eukaryota Opisthokonta Fungi Microsporidia       Pancytospora Pancytospora epiphaga
30402694 30402694 PRJNA841653_P_NODE_47973_length_249_cov_0.875000_g47299_i0 PRJNA841653 47973 249 0.875 2.17875 Nosema granulosis 83296 Fungi Fungi 48.1 5.05e-4   NR KAF9760552.1 83296 g47299 i0 48.7 0.939759036144578 39 20 47 0 190 74 584 622 KAF9760552.1 Retrovirus-related Pol polyprotein from transposon, partial [Nosema granulosis] diamond 234 48.1 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Nosema Nosema granulosis
32867278 32867278 PRJNA841653_P_NODE_15660_length_415_cov_1.599415_g14988_i0 PRJNA841653 15660 415 1.599415 6.63757225 Dictyocoela roeselum 288439 Fungi Fungi 90.1 6.83e-18   NR KAG0420334.1 288439 g14988 i0 38.7 5.72530120481928 137 79 96.1 3 403 5 514 649 KAG0420334.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Dictyocoela roeselum] diamond 2376 90.1 1 Eukaryota Opisthokonta Fungi Microsporidia       Dictyocoela Dictyocoela roeselum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;