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contig_metadata

22 rows where bioproject = "PRJNA841653", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 22 ✖

tax_clade 1

  • Sar · 22 ✖

bioproject 1

  • PRJNA841653 · 22 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2105844 2105844 PRJNA841653_P_NODE_29382_length_300_cov_2.933921_g28708_i0 PRJNA841653 29382 300 2.933921 8.801763 Peronospora myosotidis 162098 SAR_Eukaryotes SAR_Eukaryotes 518 2.29e-142   NTclustered gi|23306490|gb|AY035473.1| 162098 g28708 i0 99.301 98.42 286 2 95 0 1 286 286 1 Peronospora myosotidis isolate MG 1-4 large subunit ribosomal RNA gene, partial sequence blastn 29526 518 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora myosotidis
4658712 4658712 PRJNA841653_P_NODE_25564_length_323_cov_0.900000_g24890_i0 PRJNA841653 25564 323 0.9 2.907 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 130 9.31e-34   NR NP_037607.1 4787 g24890 i0 66.3 7.93188854489164 95 32 88.2 0 32 316 132 226 NP_037607.1 NADH dehydrogenase subunit 7 [Phytophthora infestans] diamond 2562 130 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
5933614 5933614 PRJNA841653_P_NODE_31705_length_289_cov_2.750000_g31031_i0 PRJNA841653 31705 289 2.75 7.9475 Peronospora sp. 1982665 SAR_Eukaryotes SAR_Eukaryotes 531 2.82e-146   NTclustered gi|2703611743|gb|PP531600.1| 1982665 g31031 i0 100 99.3148788927336 287 0 99 0 1 287 598 312 Peronospora sp. voucher GLM-F68067 large subunit ribosomal RNA gene, partial sequence blastn 28702 531 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora sp.
8483626 8483626 PRJNA841653_P_NODE_52087_length_246_cov_0.890173_g51413_i0 PRJNA841653 52087 246 0.890173 2.18982558 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.03e-5   NTclustered gi|669170970|ref|XM_008622612.1| 1156394 g51413 i0 93.182 5.35365853658537 44 1 17 2 28 70 265 223 Saprolegnia diclina VS20 rab family, other partial mRNA blastn 1317 63.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
9758598 9758598 PRJNA841653_P_NODE_39188_length_263_cov_2.278947_g38514_i0 PRJNA841653 39188 263 2.278947 5.99363061 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 313 9.979999999999999e-81   NTclustered gi|325195057|emb|FR825852.1| 890382 g38514 i0 89.879 82.6882129277567 247 19 92 5 17 259 108 352 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 21747 313 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
11434412 11434412 PRJNA841653_P_NODE_2429_length_1148_cov_28.598140_g1997_i0 PRJNA841653 2429 1148 28.59814 328.3066472 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 351 1.03e-91   NTclustered gi|533310373|ref|NC_022179.1| 74557 g1997 i0 81.004 35.9721254355401 458 74 39 10 487 939 13608 14057 Thraustotheca clavata mitochondrion, complete genome blastn 41296 351 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
13583653 13583653 PRJNA841653_P_NODE_11271_length_496_cov_2.872340_g10602_i0 PRJNA841653 11271 496 2.87234 14.2468064 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 141 9.999999999999999e-29   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g10602 i0 90.09 21.9173387096774 111 8 22 3 345 454 41764 41656 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 10871 141 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
14858542 14858542 PRJNA841653_P_NODE_40372_length_259_cov_2.424731_g39698_i0 PRJNA841653 40372 259 2.424731 6.28005329 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 97.1 1.07e-15   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g39698 i0 87.805 1.16216216216216 82 10 32 0 65 146 1128 1209 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 301 97.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
18682030 18682030 PRJNA841653_P_NODE_46315_length_250_cov_0.870056_g45641_i0 PRJNA841653 46315 250 0.870056 2.17514 Saprolegnia parasitica CBS 223.65 695850 SAR_Eukaryotes SAR_Eukaryotes 117 2.21e-28   NR XP_012205517.1 695850 g45641 i0 68.3 4.92 82 26 98.4 0 5 250 551 632 XP_012205517.1 hypothetical protein SPRG_10477 [Saprolegnia parasitica CBS 223.65] diamond 1230 117 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
19082469 19082469 PRJNA841653_P_NODE_61195_length_241_cov_0.916667_g60521_i0 PRJNA841653 61195 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 84.2 7.69e-12   NTclustered gi|189084724|gb|BT032242.1| 4784 g60521 i0 91.803 20.954356846473 61 4 25 1 71 131 152 211 Phytophthora capsici clone CBOT161-B07 mRNA sequence blastn 5050 84.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
19957334 19957334 PRJNA841653_P_NODE_56876_length_244_cov_0.900585_g56202_i0 PRJNA841653 56876 244 0.900585 2.1974274 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 89 1.89e-18   NR RHY90193.1 112090 g56202 i0 62 6.02459016393443 71 26 87.3 1 1 213 253 322 RHY90193.1 hypothetical protein DYB26_009734, partial [Aphanomyces astaci] diamond 1470 89.7 0.992196209587514 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
23783066 23783066 PRJNA841653_P_NODE_48259_length_248_cov_1.542857_g47585_i0 PRJNA841653 48259 248 1.542857 3.82628536 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 65.8 2.88e-6   NTclustered gi|166035135|emb|CU348968.1| 100861 g47585 i0 87.097 0.862903225806452 62 2 25 5 49 110 133 78 Aphanomyces euteiches cDNA blastn 214 65.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24182295 24182295 PRJNA841653_P_NODE_28039_length_308_cov_1.280851_g27365_i0 PRJNA841653 28039 308 1.280851 3.94502108 root 1 Root_unresolved Root_unresolved 171 7.61e-38   NTclustered gi|145932422|ref|NC_009384.1| 164328 g27365 i0 79.2 10.1038961038961 250 48 81 3 30 277 22589 22836 Phytophthora ramorum mitochondrion, complete genome blastn 3112 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
26959617 26959617 PRJNA841653_P_NODE_58102_length_243_cov_0.905882_g57428_i0 PRJNA841653 58102 243 0.905882 2.20129326 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.0105   NR KAG1711851.1 4784 g57428 i0 37.7 0.753086419753086 61 33 69.1 2 48 215 618 678 KAG1711851.1 hypothetical protein DVH05_009093 [Phytophthora capsici] diamond 183 44.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
29589074 29589074 PRJNA841653_P_NODE_44810_length_250_cov_1.598870_g44136_i0 PRJNA841653 44810 250 1.59887 3.997175 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 73.6 5.85e-13   NR TMW69051.1 41045 g44136 i0 39.5 2.628 76 45 90 1 19 243 939 1014 TMW69051.1 hypothetical protein Poli38472_001207 [Pythium oligandrum] diamond 657 73.9 0.995940460081191 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30474059 30474059 PRJNA841653_P_NODE_38793_length_265_cov_1.161458_g38119_i0 PRJNA841653 38793 265 1.161458 3.0778637 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 73.9 5.19e-13   NR OQR94210.1 74557 g38119 i0 53.8 2.20754716981132 65 30 73.6 0 1 195 361 425 OQR94210.1 hypothetical protein THRCLA_08223 [Thraustotheca clavata] diamond 585 74.3 0.994616419919246 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
31295430 31295430 PRJNA841653_P_NODE_27175_length_313_cov_1.062500_g26501_i0 PRJNA841653 27175 313 1.0625 3.325625 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 160 8.81e-44   NR TMW61138.1 41045 g26501 i0 73 8.59744408945687 100 27 95.8 0 305 6 222 321 TMW61138.1 hypothetical protein Poli38472_013601 [Pythium oligandrum] diamond 2691 160 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
31611832 31611832 PRJNA841653_P_NODE_29356_length_301_cov_0.956140_g28682_i0 PRJNA841653 29356 301 0.95614 2.8779814 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 89 3.65e-21   NR CCI45616.1 65357 g28682 i0 91.5 5.70099667774086 47 4 46.8 0 296 156 5 51 CCI45616.1 unnamed protein product [Albugo candida] diamond 1716 89.4 0.995525727069351 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
32046268 32046268 PRJNA841653_P_NODE_48198_length_248_cov_1.725714_g47524_i0 PRJNA841653 48198 248 1.725714 4.27977072 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 55.1 1.82e-6   NR KAF0686063.1 120398 g47524 i0 63.2 0.459677419354839 38 14 46 0 96 209 1318 1355 KAF0686063.1 hypothetical protein As57867_022056 [Aphanomyces stellatus] diamond 114 55.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
32331344 32331344 PRJNA841653_P_NODE_55699_length_244_cov_0.900585_g55025_i0 PRJNA841653 55699 244 0.900585 2.1974274 Phytophthora infestans T3 4787 SAR_Eukaryotes SAR_Eukaryotes 41.2 0.0399   NR XP_002895242.1 403677 g55025 i0 31.5 0.897540983606557 73 42 89.8 2 231 13 10 74 XP_002895242.1 uncharacterized protein PITG_21130 [Phytophthora infestans T30-4] diamond 219 41.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
32709862 32709862 PRJNA841653_P_NODE_55700_length_244_cov_0.900585_g55026_i0 PRJNA841653 55700 244 0.900585 2.1974274 Phytophthora nicotianae CJ 4792 SAR_Eukaryotes SAR_Eukaryotes 137 1.77e-38   NR ETO99862.1 1317063 g55026 i0 100 0.848360655737705 69 0 84.8 0 38 244 1 69 ETO99862.1 hypothetical protein F441_22714, partial [Phytophthora nicotianae CJ01A1] diamond 207 137 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
32772799 32772799 PRJNA841653_P_NODE_30080_length_297_cov_1.348214_g29406_i0 PRJNA841653 30080 297 1.348214 4.00419558 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 101 1.04e-22   NR KAH9091351.1 100861 g29406 i0 50.5 0.97979797979798 97 46 98 1 7 297 389 483 KAH9091351.1 hypothetical protein LEN26_018763 [Aphanomyces euteiches] diamond 291 101 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;